ENSGALG00000016316


Gallus gallus

Features
Gene ID: ENSGALG00000016316
  
Biological name :GCM1
  
Synonyms : chorion-specific transcription factor GCMa / GCM1
  
Possible biological names infered from orthology : glial cells missing homolog 1 / P70348 / Q9NP62
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 88656612
Gene end: 88663923
  
Corresponding Affymetrix probe sets: Gga.11325.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026273
NCBI entrez gene - 404300     See in Manteia.
RefSeq - NM_206980
RefSeq - XM_015284823
RefSeq Peptide - NP_996863
swissprot - F1NQZ7
Ensembl - ENSGALG00000016316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GCM1ENSG00000137270Homo sapiens
 Gcm1ENSMUSG00000023333Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
GCM2 / chorion-specific transcription factor GCMb / O75603* / glial cells missing homolog 2*ENSGALG0000001276836


Protein motifs (from Interpro)
Interpro ID Name
 IPR003902  Transcription regulator GCM domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0042063 gliogenesis IBA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0060018 astrocyte fate commitment IEA
 biological_processGO:0060143 positive regulation of syncytium formation by plasma membrane fusion IEA
 biological_processGO:0060670 branching involved in labyrinthine layer morphogenesis IEA
 biological_processGO:0060706 cell differentiation involved in embryonic placenta development IEA
 biological_processGO:0060800 regulation of cell differentiation involved in embryonic placenta development IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005667 transcription factor complex IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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