ENSGALG00000027594


Gallus gallus

Features
Gene ID: ENSGALG00000027594
  
Biological name :HIST1H2B5
  
Synonyms : Gallus gallus histone cluster 1, H2B-V (HIST1H2B5), mRNA. / HIST1H2B5 / P0C1H3
  
Possible biological names infered from orthology : HIST1H2BA / histone cluster 1 H2B family member a / Histone H2B type 1-A / P70696 / Q96A08
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 48199091
Gene end: 48199471
  
Corresponding Affymetrix probe sets: Gga.5915.1.S1_at (Chicken Array)   GgaAffx.23665.1.S1_at (Chicken Array)   GgaAffx.23665.1.S1_x_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000042437
NCBI entrez gene - 417957     See in Manteia.
NCBI entrez gene - 770267     See in Manteia.
RefSeq - NM_001079721
RefSeq - XM_001233336
RefSeq Peptide - NP_001073189
swissprot - P0C1H3
Ensembl - ENSGALG00000027594
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q96A08ENSG00000146047Homo sapiens
 P70696ENSMUSG00000050799Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
P0C1H3 / Histone H2B 1/2/3/4/6 / Q96A08* / P70696* / HIST1H2BA* / Histone H2B type 1-A * / histone cluster 1 H2B family member a*ENSGALG00000027571100
P0C1H3 / Histone H2B 1/2/3/4/6 / Q96A08* / P70696* / HIST1H2BA* / Histone H2B type 1-A * / histone cluster 1 H2B family member a*ENSGALG00000037934100
P0C1H3 / HIST1H2B7 / Histone H2B 1/2/3/4/6 / P70696* / Q96A08* / HIST1H2BA* / Histone H2B type 1-A * / histone cluster 1 H2B family member a*ENSGALG00000039722100
P0C1H3 / Histone H2B 1/2/3/4/6 / Q96A08* / P70696* / HIST1H2BA* / Histone H2B type 1-A * / histone cluster 1 H2B family member a*ENSGALG00000042263100
Q9PSW9 / HIST1H2B8 / Histone H2B 8 ENSGALG0000003056798
P0C1H5 / Histone H2B 7 / Q96A08* / P70696* / HIST1H2BA* / Histone H2B type 1-A * / histone cluster 1 H2B family member a*ENSGALG0000003690898
ENSGALG0000003831598
AC021097.2*ENSGALG0000003180478


Protein motifs (from Interpro)
Interpro ID Name
 IPR000558  Histone H2B
 IPR007125  Histone H2A/H2B/H3
 IPR009072  Histone-fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006334 nucleosome assembly IBA
 biological_processGO:0042742 defense response to bacterium IEA
 cellular_componentGO:0000786 nucleosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0003677 DNA binding IBA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
PRC2 methylates histones and DNA
Condensation of Prophase Chromosomes
Oxidative Stress Induced Senescence
HATs acetylate histones
B-WICH complex positively regulates rRNA expression
Transcriptional regulation by small RNAs
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks
Nonhomologous End-Joining (NHEJ)
Processing of DNA double-strand break ends
Deposition of new CENPA-containing nucleosomes at the centromere
G2/M DNA damage checkpoint
RNA Polymerase I Promoter Opening
RNA Polymerase I Chain Elongation
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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