ENSGALG00000041296


Gallus gallus

Features
Gene ID: ENSGALG00000041296
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : AC105001.2 / P40646 / Q9BT81 / SOX7 / SRY-box 7 / SRY (sex determining region Y)-box 7
  
Species: Gallus gallus
  
Chr. number: 3
Strand: -1
Band:
Gene start: 107272767
Gene end: 107275351
  
Corresponding Affymetrix probe sets: GgaAffx.10658.1.S1_at (Chicken Array)   GgaAffx.20877.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000056925
NCBI entrez gene - 771337     See in Manteia.
RefSeq - XM_001234627
swissprot - A0A1D5PVF7
Ensembl - ENSGALG00000041296
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox7ENSDARG00000030125Danio rerio
 AC105001.2ENSG00000258724Homo sapiens
 SOX7ENSG00000171056Homo sapiens
 Sox7ENSMUSG00000063060Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX17 / transcription factor SOX-17 / Q61473* / Q9H6I2* / SRY-box 17*ENSGALG0000003285139
SOX17* / Q61473* / Q9H6I2* / SRY-box 17* / Transcription factor SOX-17 *ENSGALG0000003299438
SOX18 / transcription factor SOX-18 / P35713* / P43680* / SRY-box 18*ENSGALG0000003411838
SOX9 / P48434 / Transcription factor SOX-9 / Q04887* / P48436* / SRY-box 9*ENSGALG0000000438624
SOX8 / transcription factor SOX-8 / Q04886* / P57073* / SRY-box 8* / SRY (sex determining region Y)-box 8*ENSGALG0000000526324
SOX10 / Q9W757 / Transcription factor SOX-10 / Q04888* / P56693* / SRY-box 10*ENSGALG0000001229022
SOX4 / transcription factor SOX-4 / Q06831* / Q06945* / SRY-box 4*ENSGALG0000003649721
SOX1 / transcription factor SOX-1 / O00570* / P53783* / SRY-box 1*ENSGALG0000003035320
SOX2 / P48430 / Transcription factor SOX-2 / P48431* / SRY-box 2*ENSGALG0000004346017
SOX12 / SRY-box 12 / O15370* / Q04890* / Transcription factor SOX-12 *ENSGALG0000003595115
SOX14 / Q9W7R6 / Transcription factor SOX-14 / Q04892* / O95416* / SRY-box 14*ENSGALG0000003735215
SOX21 / Q9W7R5 / Transcription factor SOX-21 / Q9Y651* / Q811W0* / SRY-box 21*ENSGALG0000003515714


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR021934  Sox, C-terminal
 IPR033392  Sox 7/17/18, central domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0003705 transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA
 molecular_functionGO:0044212 transcription regulatory region DNA binding IEA


Pathways (from Reactome)
Pathway description
Deactivation of the beta-catenin transactivating complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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