ENSGALG00000030353


Gallus gallus

Features
Gene ID: ENSGALG00000030353
  
Biological name :SOX1
  
Synonyms : SOX1 / transcription factor SOX-1
  
Possible biological names infered from orthology : O00570 / P53783 / SRY-box 1
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 139815684
Gene end: 139817990
  
Corresponding Affymetrix probe sets: Gga.165.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000050087
NCBI entrez gene - 374240     See in Manteia.
RefSeq - NM_204333
RefSeq Peptide - NP_989664
swissprot - A0A1D5PBF9
Ensembl - ENSGALG00000030353
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sox1aENSDARG00000069866Danio rerio
 sox1bENSDARG00000008131Danio rerio
 SOX1ENSG00000182968Homo sapiens
 Sox1ENSMUSG00000096014Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SOX2 / P48430 / Transcription factor SOX-2 / P48431* / SRY-box 2*ENSGALG0000004346054
SOX21 / Q9W7R5 / Transcription factor SOX-21 / Q9Y651* / Q811W0* / SRY-box 21*ENSGALG0000003515730
SOX14 / Q9W7R6 / Transcription factor SOX-14 / Q04892* / O95416* / SRY-box 14*ENSGALG0000003735228
SOX10 / Q9W757 / Transcription factor SOX-10 / Q04888* / P56693* / SRY-box 10*ENSGALG0000001229021
SOX17 / transcription factor SOX-17 / Q61473* / Q9H6I2* / SRY-box 17*ENSGALG0000003285121
SOX17* / Q61473* / Q9H6I2* / SRY-box 17* / Transcription factor SOX-17 *ENSGALG0000003299421
SOX7* / Q9BT81* / P40646* / SRY-box 7* / AC105001.2* / SRY (sex determining region Y)-box 7*ENSGALG0000004129621
SOX9 / P48434 / Transcription factor SOX-9 / Q04887* / P48436* / SRY-box 9*ENSGALG0000000438620
SOX8 / transcription factor SOX-8 / Q04886* / P57073* / SRY-box 8* / SRY (sex determining region Y)-box 8*ENSGALG0000000526320
SOX18 / transcription factor SOX-18 / P35713* / P43680* / SRY-box 18*ENSGALG0000003411820
SOX4 / transcription factor SOX-4 / Q06831* / Q06945* / SRY-box 4*ENSGALG0000003649720
SOX12 / SRY-box 12 / O15370* / Q04890* / Transcription factor SOX-12 *ENSGALG0000003595115


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR022097  Transcription factor SOX
 IPR031268  Transcription factor SOX-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0002089 lens morphogenesis in camera-type eye IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0021521 ventral spinal cord interneuron specification IEA
 biological_processGO:0021879 forebrain neuron differentiation IEA
 biological_processGO:0021884 forebrain neuron development IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001046 core promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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