ENSMUSG00000023923


Mus musculus

Features
Gene ID: ENSMUSG00000023923
  
Biological name :Tbc1d5
  
Synonyms : Q80XQ2 / Tbc1d5 / TBC1 domain family member 5
  
Possible biological names infered from orthology : Q92609
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: C
Gene start: 50733124
Gene end: 51179352
  
Corresponding Affymetrix probe sets: 10451736 (MoGene1.0st)   10451761 (MoGene1.0st)   1430808_at (Mouse Genome 430 2.0 Array)   1439544_at (Mouse Genome 430 2.0 Array)   1443896_at (Mouse Genome 430 2.0 Array)   1447200_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000024717
Ensembl peptide - ENSMUSP00000153172
NCBI entrez gene - 72238     See in Manteia.
MGI - MGI:1919488
RefSeq - XM_017317657
RefSeq - NM_001285991
RefSeq - NM_001285993
RefSeq - NM_028162
RefSeq - XM_006524965
RefSeq - XM_006524967
RefSeq - XM_011246640
RefSeq Peptide - NP_001272920
RefSeq Peptide - NP_001272922
RefSeq Peptide - NP_082438
swissprot - Q80XQ2
swissprot - A0A286YDB3
Ensembl - ENSMUSG00000023923
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbc1d5ENSDARG00000036212Danio rerio
 TBC1D5ENSGALG00000011251Gallus gallus
 Q92609ENSG00000131374Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8R3D1 / Tbc1d13 / TBC1 domain family, member 13 / Q9NVG8*ENSMUSG0000003967812


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002092 positive regulation of receptor internalization IEA
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006914 autophagy ISO
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016236 macroautophagy IEA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0042594 response to starvation IEA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005776 autophagosome ISO
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030122 AP-2 adaptor complex IEA
 cellular_componentGO:0030904 retromer complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:1990316 Atg1/ULK1 kinase complex IEA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0017137 Rab GTPase binding IBA
 molecular_functionGO:0035612 AP-2 adaptor complex binding IEA
 molecular_functionGO:1905394 retromer complex binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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