ENSMUSG00000036103


Mus musculus

Features
Gene ID: ENSMUSG00000036103
  
Biological name :Colec12
  
Synonyms : Colec12 / Collectin-12 / Q8K4Q8
  
Possible biological names infered from orthology : collectin subfamily member 12 / Q5KU26
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: A1
Gene start: 9707648
Gene end: 9877995
  
Corresponding Affymetrix probe sets: 10453747 (MoGene1.0st)   1419693_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000043220
NCBI entrez gene - 140792     See in Manteia.
MGI - MGI:2152907
RefSeq - NM_130449
RefSeq - XM_006525640
RefSeq Peptide - NP_569716
swissprot - Q8K4Q8
Ensembl - ENSMUSG00000036103
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 A5PMY6ENSDARG00000061140Danio rerio
 COLEC12ENSGALG00000014910Gallus gallus
 Q5KU26ENSG00000158270Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8C850 / Scara3 / Scavenger receptor class A member 3 / Q6AZY7*ENSMUSG0000003446327
Col6a2 / Q02788 / Mus musculus collagen, type VI, alpha 2 (Col6a2), transcript variant 2, mRNA. / P12110* / collagen type VI alpha 2 chain*ENSMUSG0000002024118
Col6a1 / Q04857 / Collagen alpha-1(VI) chain / P12109* / collagen type VI alpha 1 chain*ENSMUSG0000000111917
Q07563 / Col17a1 / Collagen alpha-1(XVII) chain 120 kDa linear IgA disease antigen homolog / Q9UMD9* / collagen type XVII alpha 1 chain*ENSMUSG0000002506417
Q2UY11 / Col28a1 / Collagen alpha-1(XXVIII) chain / Q2UY09* / collagen type XXVIII alpha 1 chain*ENSMUSG0000006879417
Colq / O35348 / Acetylcholinesterase collagenic tail peptide / Q9Y215* / collagen like tail subunit of asymmetric acetylcholinesterase*ENSMUSG0000005760612


Protein motifs (from Interpro)
Interpro ID Name
 IPR001304  C-type lectin-like
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR016186  C-type lectin-like/link domain superfamily
 IPR016187  C-type lectin fold
 IPR018378  C-type lectin, conserved site
 IPR033989  CD209-like, C-type lectin-like domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006910 phagocytosis, recognition IEA
 biological_processGO:0006955 immune response IDA
 biological_processGO:0034138 toll-like receptor 3 signaling pathway IEA
 biological_processGO:0060355 positive regulation of cell adhesion molecule production IEA
 biological_processGO:0071360 cellular response to exogenous dsRNA IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane ISS
 molecular_functionGO:0008329 signaling pattern recognition receptor activity IEA
 molecular_functionGO:0030169 low-density lipoprotein particle binding IEA
 molecular_functionGO:0030246 carbohydrate binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell
Scavenging by Class A Receptors


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000036103 Q8K4Q8 / Colec12 / Collectin-12 / Q5KU26* / collectin subfamily member 12*  / complex
 ENSMUSG00000046245 Pilra / Q2YFS3 / Paired immunoglobulin-like type 2 receptor alpha / PILRB* / Q9UKJ0* / Q9UKJ1* / paired immunoglobin-like type 2 receptor beta* / paired immunoglobin like type 2 receptor alpha*  / complex / reaction
 ENSMUSG00000066684 Q2YFS2 / Pilrb1 / Paired immunoglobulin-like type 2 receptor beta / PILRB* / PILRA* / Q9UKJ0* / Q9UKJ1* / paired immunoglobin-like type 2 receptor beta* / paired immunoglobin like type 2 r...  / complex / reaction
 ENSMUSG00000066682 Q2YFS1 / Pilrb2 / Paired immunoglobulin-like type 2 receptor beta-2 / PILRB* / PILRA* / Q9UKJ0* / Q9UKJ1* / paired immunoglobin-like type 2 receptor beta* / paired immunoglobin like type 2...  / complex / reaction






 

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