ENSMUSG00000038352


Mus musculus

Features
Gene ID: ENSMUSG00000038352
  
Biological name :Arl5c
  
Synonyms : ADP-ribosylation factor-like protein 5C / Arl5c / Q6P068
  
Possible biological names infered from orthology : A6NH57 / ADP ribosylation factor like GTPase 5C
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: D
Gene start: 97989578
Gene end: 97996181
  
Corresponding Affymetrix probe sets: 10390535 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000037214
Ensembl peptide - ENSMUSP00000103188
NCBI entrez gene - 217151     See in Manteia.
MGI - MGI:3028577
RefSeq - XM_011248941
RefSeq - NM_207231
RefSeq - XM_011248939
RefSeq - XM_011248940
RefSeq Peptide - NP_997114
swissprot - A2A541
swissprot - Q6P068
Ensembl - ENSMUSG00000038352
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arl5cENSDARG00000035719Danio rerio
 ARL5CENSG00000141748Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arl5b / ADP ribosylation factor like GTPase 5B / Q96KC2*ENSMUSG0000001741873
Arl5a / Q80ZU0 / ADP-ribosylation factor-like protein 5A / Q9Y689* / ADP ribosylation factor like GTPase 5A*ENSMUSG0000003609370
Arl1 / P61211 / ADP-ribosylation factor-like protein 1 / P40616* / ADP ribosylation factor like GTPase 1*ENSMUSG0000006090442
Arl6 / O88848 / ADP-ribosylation factor-like protein 6 / Q9H0F7* / ADP ribosylation factor like GTPase 6*ENSMUSG0000002272237


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000266 abnormal cardiac morphology "anomalies in the hollow, muscular organ that maintains the circulation of the blood" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

 MP:0000274 enlarged heart "increase over normal size of the heart" [J:29971]
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Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

 MP:0001891 hydroencephaly "excessive accumulation of cerebrospinal fluid in the brain, especially the cerebral ventricles, often leading to increased brain size and other brain trauma" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, MeSH:National Library of Medicine - Medical Subject Headings, 2003]
Show

Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

 MP:0002152 abnormal brain morphology "anomalous structure of or abnormal development of the brain, one of the two components of the central nervous system and the center of thought and emotion; controls coordination, bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.)" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, http://cancerweb.ncl.ac.uk]
Show

Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

 MP:0005419 hypoalbuminemia "blood albumin concentration below the normal range" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
Show

Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

 MP:0005566 decreased blood urea nitrogen level "low circulating concentration of nitrogen, in the form of urea; commonly used to measure renal function" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Arf4tm1b(KOMP)Wtsi/Arf4tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Arf4tm1b(KOMP)Wtsi/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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