ENSMUSG00000051323


Mus musculus

Features
Gene ID: ENSMUSG00000051323
  
Biological name :Pcdh19
  
Synonyms : Pcdh19 / Protocadherin-19 / Q80TF3
  
Possible biological names infered from orthology : Q8TAB3
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: E3
Gene start: 133582860
Gene end: 133688987
  
Corresponding Affymetrix probe sets: 10606600 (MoGene1.0st)   1437360_at (Mouse Genome 430 2.0 Array)   1444422_at (Mouse Genome 430 2.0 Array)   1455145_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000116886
Ensembl peptide - ENSMUSP00000141338
Ensembl peptide - ENSMUSP00000128313
Ensembl peptide - ENSMUSP00000049889
NCBI entrez gene - 279653     See in Manteia.
MGI - MGI:2685563
RefSeq - NM_001105246
RefSeq - XM_006528557
RefSeq - XM_006528556
RefSeq - NM_001105245
RefSeq Peptide - NP_001098715
RefSeq Peptide - NP_001098716
swissprot - A2AGW4
swissprot - Q80TF3
swissprot - A0A1Y7VLJ9
swissprot - E9Q5E1
Ensembl - ENSMUSG00000051323
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pcdh19ENSDARG00000034344Danio rerio
 PCDH19ENSGALG00000006822Gallus gallus
 PCDH19ENSG00000165194Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdh17 / protocadherin 17 / O14917*ENSMUSG0000003556648
Pcdh10 / protocadherin 10 / Q9P2E7*ENSMUSG0000004910034
Pcdh18 / Q8VHR0 / Protocadherin 18 / Q9HCL0*ENSMUSG0000003789233
O55134 / Pcdh12 / Protocadherin-12 / Q9NPG4*ENSMUSG0000002444029
Pcdh8 / Q7TSK3 / Protocadherin-8 / O95206*ENSMUSG0000003642229
Pcdhac2ENSMUSG0000010269727
Q91XY4 / Pcdhga4 / Protocadherin gamma-A4 / Q9Y5G9* / protocadherin gamma subfamily A, 4*ENSMUSG0000010367726
Pcdhga10 / protocadherin gamma subfamily A, 10 / Q9Y5H3*ENSMUSG0000010222225
Pcdhga11 / protocadherin gamma subfamily A, 11 / Q9Y5H2*ENSMUSG0000010274225
Pcdhga7 / protocadherin gamma subfamily A, 7 / Q9Y5G6*ENSMUSG0000010347225
Pcdhga8 / protocadherin gamma subfamily A, 8 / Q9Y5G5*ENSMUSG0000010389725
Pcdha2 / protocadherin alpha 2ENSMUSG0000010414825
Pcdhga3 / protocadherin gamma subfamily A, 3 / Q9Y5H0*ENSMUSG0000010434625
Pcdha3 / protocadherin alpha 3ENSMUSG0000010231224
Pcdhga5 / protocadherin gamma subfamily A, 5 / Q9Y5G8*ENSMUSG0000010356724
Pcdhga6 / protocadherin gamma subfamily A, 6 / Q9Y5G7*ENSMUSG0000010379323


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR030716  Protocadherin-19


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0007420 brain development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003232 abnormal forebrain development "anomaly in the formation or patterning of the anterior primitive cerebral vesicle; most rostral of three primary vesicles of the embryonic neural tube" [J:93081, smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Pcdh19tm1Tac/Y
Genetic Background: involves: 129S/SvEv * C57BL/6

 MP:0004994 abnormal brain wave pattern "any anomaly in the standard pattern of rhythmic and rapid fluctuation of electrical potential between parts of the brain, often visualized on an electroencephalogram (EEG); the pattern is often measured to diagnose neurological conditions such as seizure disorders (epilepsy)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ccdc39prh/Ccdc39tm1a(KOMP)Wtsi
Genetic Background: involves: A/J * C57BL/6N * FVB/N

 MP:0006009 abnormal neuronal migration "defective or impaired movement of immature neurons from germinal zones to specific positions where they will reside as they mature" [smb:Susan M Bello, Mouse Genome Informatics Curator]
Show

Allelic Composition: Ccdc39prh/Ccdc39tm1a(KOMP)Wtsi
Genetic Background: involves: A/J * C57BL/6N * FVB/N

Allelic Composition: Pcdh19tm1Tac/Y
Genetic Background: involves: 129S/SvEv * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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