ENSMUSG00000079022


Mus musculus

Features
Gene ID: ENSMUSG00000079022
  
Biological name :Col22a1
  
Synonyms : Col22a1 / collagen, type XXII, alpha 1
  
Possible biological names infered from orthology : collagen type XXII alpha 1 chain / Q8NFW1
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: D3
Gene start: 71795795
Gene end: 72034227
  
Corresponding Affymetrix probe sets: 10429234 (MoGene1.0st)   1429280_at (Mouse Genome 430 2.0 Array)   1446851_at (Mouse Genome 430 2.0 Array)   1453084_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000155641
Ensembl peptide - ENSMUSP00000124270
Ensembl peptide - ENSMUSP00000125069
NCBI entrez gene - 69700     See in Manteia.
MGI - MGI:1916950
RefSeq - XM_006521383
RefSeq - XM_006521378
RefSeq - XM_006521381
RefSeq - XM_006521382
RefSeq - NM_027174
RefSeq Peptide - NP_081450
swissprot - E9Q7P1
swissprot - F6TGL6
Ensembl - ENSMUSG00000079022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL22A1ENSGALG00000038022Gallus gallus
 Q8NFW1ENSG00000169436Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col4a5 / collagen, type IV, alpha 5 / P29400* / collagen type IV alpha 5 chain*ENSMUSG0000003127435
Col4a1 / P02463 / Collagen alpha-1(IV) chain Arresten / P02462* / collagen type IV alpha 1 chain*ENSMUSG0000003150234
Col4a4 / Q9QZR9 / Collagen alpha-4(IV) chain / P53420* / collagen type IV alpha 4 chain*ENSMUSG0000006715834
Col4a3 / Q9QZS0 / Collagen alpha-3(IV) chain Tumstatin / Q01955* / collagen type IV alpha 3 chain*ENSMUSG0000007946533
Col4a6 / collagen, type IV, alpha 6 / Q14031* / collagen type IV alpha 6 chain*ENSMUSG0000003127332
Col4a2 / P08122 / Collagen alpha-2(IV) chain Canstatin / P08572* / collagen type IV alpha 2 chain*ENSMUSG0000003150332
Q8BLX7 / Col16a1 / Collagen alpha-1(XVI) chain / Q07092* / collagen type XVI alpha 1 chain*ENSMUSG0000004069032
Q0VF58 / Col19a1 / Collagen alpha-1(XIX) chain / Q14993* / collagen type XIX alpha 1 chain*ENSMUSG0000002614128


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000079022 Col22a1 / collagen, type XXII, alpha 1 / Q8NFW1* / collagen type XXII alpha 1 chain*  / complex / reaction






 

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