ENSMUSG00000102428


Mus musculus

Features
Gene ID: ENSMUSG00000102428
  
Biological name :Pcdhga12
  
Synonyms : Pcdhga12
  
Possible biological names infered from orthology :
  
Species: Mus musculus
  
Chr. number: 18
Strand: 1
Band: B3
Gene start: 37765580
Gene end: 37841873
  
Corresponding Affymetrix probe sets: 1423628_s_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000036359
NCBI entrez gene - 93724     See in Manteia.
MGI - MGI:1935229
RefSeq - NM_033595
RefSeq Peptide - NP_291073
swissprot - Q91XY7
Ensembl - ENSMUSG00000102428
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CT737184.2ENSDARG00000112930Danio rerio
 pcdh1g1ENSDARG00000104007Danio rerio
 pcdh1g11ENSDARG00000101665Danio rerio
 pcdh1g13ENSDARG00000098963Danio rerio
 pcdh1g14ENSDARG00000104057Danio rerio


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pcdhga1 / protocadherin gamma subfamily A, 1 / Q9Y5H4*ENSMUSG0000010314471
Pcdhga2 / protocadherin gamma subfamily A, 2ENSMUSG0000010333271
Pcdhgb8 / protocadherin gamma subfamily B, 8ENSMUSG0000010308153
Pcdhgb7 / protocadherin gamma subfamily B, 7 / Q9Y5F8*ENSMUSG0000010406353
Pcdhgb2 / protocadherin gamma subfamily B, 2 / Q9Y5G2*ENSMUSG0000010274852
Pcdhgb1 / protocadherin gamma subfamily B, 1 / Q9Y5G3*ENSMUSG0000010303752
Pcdhgb6 / protocadherin gamma subfamily B, 6 / Q9Y5F9*ENSMUSG0000010308852
Pcdhgb4 / protocadherin gamma subfamily B, 4 / Q9UN71*ENSMUSG0000010358552
Pcdhgb5 / protocadherin gamma subfamily B, 5 / Q9Y5G0*ENSMUSG0000010374952
Pcdhgc5 / protocadherin gamma subfamily C, 5 / Q9Y5F6*ENSMUSG0000010254349
O88689 / Gm42416 / predicted gene, 42416ENSMUSG0000010345847
Pcdhgc4 / protocadherin gamma subfamily C, 4 / Q9Y5F7*ENSMUSG0000002303646
Pcdhb12 / protocadherin beta 12 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004345837
Pcdhb20 / protocadherin beta 20 / Q9Y5E9* / PCDHB14* / protocadherin beta 14*ENSMUSG0000004619137
Pcdhb22 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000007359137
Pcdhb19 / protocadherin beta 19 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004331336
Q6PB90 / Pcdhb14 / Protocadherin beta-14 ENSMUSG0000004404336
Pcdhb7 / PCDHB4* / Q9Y5E5* / protocadherin beta 4*ENSMUSG0000004506236
Pcdhb10 / PCDHB5* / Q9Y5E4* / protocadherin beta 5*ENSMUSG0000004565736
Pcdhb8 / Q91XZ2 / Protocadherin beta-8 / Q9Y5E4* / PCDHB5* / protocadherin beta 5*ENSMUSG0000004587636


Protein motifs (from Interpro)
Interpro ID Name
 IPR002126  Cadherin
 IPR013164  Cadherin, N-terminal
 IPR015919  Cadherin-like
 IPR020894  Cadherin conserved site
 IPR031904  Cadherin, C-terminal catenin-binding domain
 IPR032455  Cadherin, cytoplasmic C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IBA
 biological_processGO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules IEA
 biological_processGO:0007267 cell-cell signaling IBA
 biological_processGO:0007399 nervous system development IBA
 biological_processGO:0016339 calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules ISS
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0005911 cell-cell junction IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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