ENSDARG00000000779


Danio rerio

Features
Gene ID: ENSDARG00000000779
  
Biological name :scfd1
  
Synonyms : scfd1 / sec1 family domain containing 1
  
Possible biological names infered from orthology : Q8BRF7 / Q8WVM8 / Sec1 family domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 28771028
Gene end: 28797395
  
Corresponding Affymetrix probe sets: Dr.1127.1.S1_at (Zebrafish Array)   NM_182861_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000121390
NCBI entrez gene - 317732     See in Manteia.
RefSeq - NM_182861
RefSeq Peptide - NP_878281
swissprot - B3DKI8
ZFIN ID - ZDB-GENE-030116-3
Ensembl - ENSDARG00000000779
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SCFD1ENSGALG00000009916Gallus gallus
 SCFD1ENSG00000092108Homo sapiens
 Scfd1ENSMUSG00000020952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IMP
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0031101 fin regeneration IMP
 biological_processGO:0034436 glycoprotein transport IMP
 biological_processGO:0048702 embryonic neurocranium morphogenesis IMP
 biological_processGO:0051216 cartilage development IMP
 cellular_componentGO:0005737 cytoplasm IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000152 retina retina cell disorganized , abnormal
Show

 ZFA:0000292 surface structure surface structure quality , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased amount , abnormal
whole organism increased amount , abnormal
whole organism dead , abnormal
whole organism decreased life span , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton chondrocyte decreased amount , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch absent , abnormal
ventral mandibular arch decreased size , abnormal
Show

 ZFA:0001306 pharyngeal arch pharyngeal arch increased amount , abnormal
pharyngeal arch increased distribution , abnormal
pharyngeal arch apoptotic process increased occurrence , abnormal
Show

 ZFA:0005059 trabecular layer trabecular layer morphology , abnormal
Show

 ZFA:0009084 chondrocyte chondrocyte vacuolated , abnormal
chondrocyte endoplasmic reticulum membrane distended , abnormal
chondrocyte extracellular matrix morphology , abnormal
chondrocyte vesicle mislocalised , abnormal
Show

 ZFA:0009094 goblet cell goblet cell absent , abnormal
Show

 ZFA:0009314 columnar chondrocyte columnar chondrocyte disorganized , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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