ENSMUSG00000020952


Mus musculus

Features
Gene ID: ENSMUSG00000020952
  
Biological name :Scfd1
  
Synonyms : Q8BRF7 / Scfd1 / Sec1 family domain-containing protein 1
  
Possible biological names infered from orthology : Q8WVM8 / sec1 family domain containing 1
  
Species: Mus musculus
  
Chr. number: 12
Strand: 1
Band: B3
Gene start: 51377510
Gene end: 51450101
  
Corresponding Affymetrix probe sets: 10395628 (MoGene1.0st)   1428006_at (Mouse Genome 430 2.0 Array)   1428335_a_at (Mouse Genome 430 2.0 Array)   1444845_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000151379
Ensembl peptide - ENSMUSP00000021335
Ensembl peptide - ENSMUSP00000151347
NCBI entrez gene - 76983     See in Manteia.
MGI - MGI:1924233
RefSeq - NM_001306178
RefSeq - NM_029825
RefSeq Peptide - NP_001293107
RefSeq Peptide - NP_084101
swissprot - A0A1W2P6R7
swissprot - Q8BRF7
Ensembl - ENSMUSG00000020952
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scfd1ENSDARG00000000779Danio rerio
 SCFD1ENSGALG00000009916Gallus gallus
 SCFD1ENSG00000092108Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein
 IPR036045  Sec1-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis ISS
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEA
 biological_processGO:0006892 post-Golgi vesicle-mediated transport IEA
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0051223 regulation of protein transport IEA
 biological_processGO:0060628 regulation of ER to Golgi vesicle-mediated transport IEA
 biological_processGO:1901998 toxin transport IMP
 biological_processGO:1902902 negative regulation of autophagosome assembly IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005798 Golgi-associated vesicle IEA
 cellular_componentGO:0005801 cis-Golgi network IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0017119 Golgi transport complex IEA
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0019905 syntaxin binding IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000006024 Napa / Q9DB05 / Alpha-soluble NSF attachment protein / P54920* / NSF attachment protein alpha*  / reaction / complex
 ENSMUSG00000010110 Stx5a / Q8K1E0 / Syntaxin-5 / STX5* / Q13190*  / complex
 ENSMUSG00000002546 Golga2 / Q921M4 / golgi autoantigen, golgin subfamily a, 2 / A7E2F4* / A8MQT2* / D6RF30* / F8WBI6* / A6NCC3* / A6NDK9* / A6NDN3* / A6NMD2* / H3BSY2* / I6L899* / P0CG33* / P0CJ92* / Q08379* ...  / reaction
 ENSMUSG00000027879 O08547 / Sec22b / Vesicle-trafficking protein SEC22b / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex
 ENSMUSG00000034187 Nsf / P46460 / Vesicle-fusing ATPase / P46459* / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSMUSG00000032513 Q91X51 / Gorasp1 / golgi reassembly stacking protein 1 / Q9BQQ3*  / reaction
 ENSMUSG00000020946 Gosr2 / O35166 / golgi SNAP receptor complex member 2 / O14653* / AC005670.2*  / complex
 ENSMUSG00000029407 Uso1 / Q9Z1Z0 / USO1 vesicle docking factor / O60763* / USO1 vesicle transport factor*  / reaction
 ENSMUSG00000032757 Bet1 / O35623 / BET1 homolog / O15155* / Bet1 golgi vesicular membrane trafficking protein*  / complex






 

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