ENSG00000092108


Homo sapiens

Features
Gene ID: ENSG00000092108
  
Biological name :SCFD1
  
Synonyms : Q8WVM8 / SCFD1 / sec1 family domain containing 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 14
Strand: 1
Band: q12
Gene start: 30622112
Gene end: 30735812
  
Corresponding Affymetrix probe sets: 215548_s_at (Human Genome U133 Plus 2.0 Array)   233229_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000452448
Ensembl peptide - ENSP00000309417
Ensembl peptide - ENSP00000379870
Ensembl peptide - ENSP00000390783
Ensembl peptide - ENSP00000443010
Ensembl peptide - ENSP00000450546
Ensembl peptide - ENSP00000450755
Ensembl peptide - ENSP00000451064
Ensembl peptide - ENSP00000451298
Ensembl peptide - ENSP00000451811
Ensembl peptide - ENSP00000452046
Ensembl peptide - ENSP00000452178
Ensembl peptide - ENSP00000452308
Ensembl peptide - ENSP00000452323
NCBI entrez gene - 23256     See in Manteia.
RefSeq - NM_182835
RefSeq - NM_001257376
RefSeq - NM_001283031
RefSeq - NM_001283032
RefSeq - NM_001283033
RefSeq - NM_016106
RefSeq - XM_005267469
RefSeq - XM_011536586
RefSeq - XM_011536587
RefSeq Peptide - NP_001269961
RefSeq Peptide - NP_001269962
RefSeq Peptide - NP_001244305
RefSeq Peptide - NP_001269960
RefSeq Peptide - NP_057190
RefSeq Peptide - NP_878255
swissprot - G3V4I1
swissprot - G3V551
swissprot - G3V5E2
swissprot - G3V5F3
swissprot - H0YIZ7
swissprot - H0YJY1
swissprot - H0YJS6
swissprot - J3KNG4
swissprot - Q8WVM8
swissprot - G3V2M8
swissprot - G3V363
swissprot - G3V3K9
Ensembl - ENSG00000092108
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scfd1ENSDARG00000000779Danio rerio
 SCFD1ENSGALG00000009916Gallus gallus
 Scfd1ENSMUSG00000020952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein
 IPR036045  Sec1-like superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis ISS
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0006890 retrograde vesicle-mediated transport, Golgi to ER ISS
 biological_processGO:0006892 post-Golgi vesicle-mediated transport ISS
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0009636 response to toxic substance IEP
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048208 COPII vesicle coating TAS
 biological_processGO:0051223 regulation of protein transport IMP
 biological_processGO:0060628 regulation of ER to Golgi vesicle-mediated transport ISS
 biological_processGO:1901998 toxin transport IEA
 biological_processGO:1902902 negative regulation of autophagosome assembly IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005798 Golgi-associated vesicle ISS
 cellular_componentGO:0005801 cis-Golgi network IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005886 plasma membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0017119 Golgi transport complex ISS
 cellular_componentGO:0032580 Golgi cisterna membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019905 syntaxin binding ISS
 molecular_functionGO:0047485 protein N-terminus binding IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000105402 NAPA / P54920 / NSF attachment protein alpha  / complex / reaction
 ENSG00000114745 Q9BQQ3 / GORASP1 / golgi reassembly stacking protein 1  / reaction
 ENSG00000265808 O75396 / SEC22B / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)  / complex / reaction
 ENSG00000167110 GOLGA2 / Q08379 / golgin A2  / reaction
 ENSG00000162236 STX5 / Q13190 / syntaxin 5  / complex
 ENSG00000108433 GOSR2 / O14653 / golgi SNAP receptor complex member 2  / complex
 ENSG00000105829 BET1 / O15155 / Bet1 golgi vesicular membrane trafficking protein  / complex
 ENSG00000138768 USO1 / O60763 / USO1 vesicle transport factor  / reaction
 ENSG00000073969 NSF / P46459 / N-ethylmaleimide sensitive factor, vesicle fusing ATPase  / reaction / complex






 

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