ENSGALG00000009916


Gallus gallus

Features
Gene ID: ENSGALG00000009916
  
Biological name :SCFD1
  
Synonyms : SCFD1 / sec1 family domain containing 1
  
Possible biological names infered from orthology : Q8BRF7 / Q8WVM8 / Sec1 family domain-containing protein 1
  
Species: Gallus gallus
  
Chr. number: 5
Strand: 1
Band:
Gene start: 34184092
Gene end: 34228758
  
Corresponding Affymetrix probe sets: GgaAffx.6231.1.S1_at (Chicken Array)   GgaAffx.6231.1.S1_s_at (Chicken Array)   GgaAffx.6231.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000016108
Ensembl peptide - ENSGALP00000062269
Ensembl peptide - ENSGALP00000055711
NCBI entrez gene - 423307     See in Manteia.
RefSeq - NM_001199714
RefSeq Peptide - NP_001186643
swissprot - A0A1L1RTW4
swissprot - A0A1D5PS31
swissprot - F1NH65
Ensembl - ENSGALG00000009916
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scfd1ENSDARG00000000779Danio rerio
 SCFD1ENSG00000092108Homo sapiens
 Scfd1ENSMUSG00000020952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001619  Sec1-like protein
 IPR027482  Sec1-like, domain 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006904 vesicle docking involved in exocytosis IEA
 biological_processGO:0009636 response to toxic substance IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0051223 regulation of protein transport IEA
 biological_processGO:1901998 toxin transport IEA
 biological_processGO:1902902 negative regulation of autophagosome assembly IEA
 cellular_componentGO:0005801 cis-Golgi network IEA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSGALG00000001107 GOSR2 / O14653* / O35166* / AC005670.2* / golgi SNAP receptor complex member 2*  / complex
 ENSGALG00000024485 BET1 / Bet1 golgi vesicular membrane trafficking protein / O15155* / O35623* / BET1 homolog *  / complex
 ENSGALG00000039704 Q5ZJW4 / SEC22B / Vesicle-trafficking protein SEC22b / O08547* / O75396* / SEC22 homolog B, vesicle trafficking protein (gene/pseudogene)*  / reaction / complex






 

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