ENSDARG00000002479


Danio rerio

Features
Gene ID: ENSDARG00000002479
  
Biological name :ercc6l
  
Synonyms : A2BGR3 / ercc6l / excision repair cross-complementation group 6-like
  
Possible biological names infered from orthology : DNA excision repair protein ERCC-6-like / ERCC excision repair 6 like, spindle assembly checkpoint helicase / Q2NKX8 / Q8BHK9
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 23913585
Gene end: 23926519
  
Corresponding Affymetrix probe sets: Dr.19263.1.S1_at (Zebrafish Array)   Dr.9388.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000012447
NCBI entrez gene - 100005291     See in Manteia.
RefSeq - XM_009301276
RefSeq - XM_009301277
RefSeq - NM_001100093
RefSeq Peptide - NP_001093563
swissprot - A2BGR3
ZFIN ID - ZDB-GENE-060531-56
Ensembl - ENSDARG00000002479
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ERCC6LENSGALG00000003881Gallus gallus
 ERCC6LENSG00000186871Homo sapiens
 Ercc6lENSMUSG00000051220Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ercc6 / excision repair cross-complementation group 6 / P0DP91* / Q03468* / Q8N328* / ERCC excision repair 6, chromatin remodeling factor*ENSDARG0000007561217
ercc6l2 / excision repair cross-complementation group 6-like 2 / Q5T890* / Q9JIM3* / ERCC excision repair 6 like 2* / DNA excision repair protein ERCC-6-like 2 *ENSDARG0000001240315


Protein motifs (from Interpro)
Interpro ID Name
 IPR000330  SNF2-related, N-terminal domain
 IPR001650  Helicase, C-terminal
 IPR006141  Intein N-terminal splicing region
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR019734  Tetratricopeptide repeat
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0016539 intein-mediated protein splicing IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore IEA
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0005694 chromosome IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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