ENSDARG00000002710


Danio rerio

Features
Gene ID: ENSDARG00000002710
  
Biological name :ncl
  
Synonyms : ncl / nucleolin
  
Possible biological names infered from orthology : P09405 / P19338
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 36673312
Gene end: 36690751
  
Corresponding Affymetrix probe sets: Dr.382.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000013803
Ensembl peptide - ENSDARP00000111815
Ensembl peptide - ENSDARP00000109546
NCBI entrez gene - 767714     See in Manteia.
swissprot - E9QB18
swissprot - B8JLQ3
swissprot - F1R6L6
ZFIN ID - ZDB-GENE-030131-6986
Ensembl - ENSDARG00000002710
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NCLENSGALG00000032930Gallus gallus
 NCLENSG00000115053Homo sapiens
 NclENSMUSG00000026234Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034230  Nucleolin, RNA recognition motif 1
 IPR034233  Nucleolin, RNA recognition motif 2
 IPR034234  Nucleolin, RNA recognition motif 3
 IPR034235  Nucleolin, RNA recognition motif 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0006364 rRNA processing IMP
 biological_processGO:0009303 rRNA transcription IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000007 blood blood accumulation heart , abnormal
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 ZFA:0000009 cardiac ventricle cardiac ventricle decreased size , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary quality , abnormal
midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
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 ZFA:0000114 heart heart decreased rate , abnormal
heart quality , abnormal
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 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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