ENSMUSG00000026234


Mus musculus

Features
Gene ID: ENSMUSG00000026234
  
Biological name :Ncl
  
Synonyms : Ncl / Nucleolin / P09405
  
Possible biological names infered from orthology : P19338
  
Species: Mus musculus
  
Chr. number: 1
Strand: -1
Band: C5
Gene start: 86344719
Gene end: 86359400
  
Corresponding Affymetrix probe sets: 10356312 (MoGene1.0st)   10356329 (MoGene1.0st)   10356331 (MoGene1.0st)   10356333 (MoGene1.0st)   1415771_at (Mouse Genome 430 2.0 Array)   1415772_at (Mouse Genome 430 2.0 Array)   1415773_at (Mouse Genome 430 2.0 Array)   1456528_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000140696
Ensembl peptide - ENSMUSP00000027438
NCBI entrez gene - 17975     See in Manteia.
MGI - MGI:97286
RefSeq - NM_010880
RefSeq - XM_006529238
RefSeq Peptide - NP_035010
swissprot - A0A087WRM5
swissprot - P09405
Ensembl - ENSMUSG00000026234
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nclENSDARG00000002710Danio rerio
 NCLENSGALG00000032930Gallus gallus
 NCLENSG00000115053Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034230  Nucleolin, RNA recognition motif 1
 IPR034233  Nucleolin, RNA recognition motif 2
 IPR034234  Nucleolin, RNA recognition motif 3
 IPR034235  Nucleolin, RNA recognition motif 4
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001525 angiogenesis IEA
 biological_processGO:0017148 negative regulation of translation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IGI
 biological_processGO:0071364 cellular response to epidermal growth factor stimulus IDA
 biological_processGO:1901838 positive regulation of transcription of nucleolar large rRNA by RNA polymerase I IEA
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEP
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005938 cell cortex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding ISO
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008022 protein C-terminus binding IEA
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0044547 DNA topoisomerase binding IEA
 molecular_functionGO:0048027 mRNA 5"-UTR binding IEA


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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