ENSDARG00000003235


Danio rerio

Features
Gene ID: ENSDARG00000003235
  
Biological name :nup88
  
Synonyms : nucleoporin 88 / nup88
  
Possible biological names infered from orthology : Q8CEC0 / Q99567
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 59089699
Gene end: 59111966
  
Corresponding Affymetrix probe sets: Dr.4121.1.A1_at (Zebrafish Array)   NM_001020466_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000025718
NCBI entrez gene - 321744     See in Manteia.
RefSeq - NM_001020466
RefSeq Peptide - NP_001018302
swissprot - A2CEI4
ZFIN ID - ZDB-GENE-050522-297
Ensembl - ENSDARG00000003235
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP88ENSGALG00000032280Gallus gallus
 NUP88ENSG00000108559Homo sapiens
 Nup88ENSMUSG00000040667Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR019321  Nucleoporin Nup88


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000055 ribosomal large subunit export from nucleus IBA
 biological_processGO:0000056 ribosomal small subunit export from nucleus IBA
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 cellular_componentGO:0005643 nuclear pore IBA
 molecular_functionGO:0005215 transporter activity IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000076 swim bladder swim bladder aplastic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism anterior-posterior axis increased length , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0009091 melanocyte melanocyte quality , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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