ENSGALG00000032280


Gallus gallus

Features
Gene ID: ENSGALG00000032280
  
Biological name :NUP88
  
Synonyms : nucleoporin 88 / NUP88
  
Possible biological names infered from orthology : Q8CEC0 / Q99567
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 3409273
Gene end: 3417817
  
Corresponding Affymetrix probe sets: GgaAffx.1095.1.S1_at (Chicken Array)   GgaAffx.24940.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051270
Ensembl peptide - ENSGALP00000056538
NCBI entrez gene - 417501     See in Manteia.
RefSeq - XM_003642421
swissprot - A0A1D5PER2
swissprot - A0A1D5PUD5
Ensembl - ENSGALG00000032280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup88ENSDARG00000003235Danio rerio
 NUP88ENSG00000108559Homo sapiens
 Nup88ENSMUSG00000040667Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR019321  Nucleoporin Nup88


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000055 ribosomal large subunit export from nucleus IEA
 biological_processGO:0000056 ribosomal small subunit export from nucleus IEA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr