ENSMUSG00000040667


Mus musculus

Features
Gene ID: ENSMUSG00000040667
  
Biological name :Nup88
  
Synonyms : nucleoporin 88 / Nup88 / Q8CEC0
  
Possible biological names infered from orthology : Q99567
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B4
Gene start: 70943058
Gene end: 70969973
  
Corresponding Affymetrix probe sets: 10387992 (MoGene1.0st)   1428073_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000048101
Ensembl peptide - ENSMUSP00000104170
Ensembl peptide - ENSMUSP00000104171
Ensembl peptide - ENSMUSP00000137024
NCBI entrez gene - 19069     See in Manteia.
MGI - MGI:104900
RefSeq - NM_001083331
RefSeq - NM_001276406
RefSeq - NM_172394
RefSeq Peptide - NP_001076800
RefSeq Peptide - NP_001263335
RefSeq Peptide - NP_765982
swissprot - Q8CEC0
swissprot - J3QNZ2
swissprot - Q5QNU0
Ensembl - ENSMUSG00000040667
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup88ENSDARG00000003235Danio rerio
 NUP88ENSGALG00000032280Gallus gallus
 NUP88ENSG00000108559Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR019321  Nucleoporin Nup88


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000055 ribosomal large subunit export from nucleus IBA
 biological_processGO:0000056 ribosomal small subunit export from nucleus IBA
 biological_processGO:0000278 mitotic cell cycle IEA
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0006606 protein import into nucleus IBA
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IBA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0046930 pore complex IEA
 molecular_functionGO:0005215 transporter activity IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0015288 porin activity IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
Regulation of HSF1-mediated heat shock response
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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