ENSDARG00000003531


Danio rerio

Features
Gene ID: ENSDARG00000003531
  
Biological name :tcea1
  
Synonyms : tcea1 / transcription elongation factor A (SII), 1
  
Possible biological names infered from orthology : P10711 / P23193 / transcription elongation factor A1 / Transcription elongation factor A protein 1
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 30739680
Gene end: 30748070
  
Corresponding Affymetrix probe sets: Dr.11529.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000092636
Ensembl peptide - ENSDARP00000147345
NCBI entrez gene - 336105     See in Manteia.
swissprot - Q7T3C1
ZFIN ID - ZDB-GENE-030131-8049
Ensembl - ENSDARG00000003531
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TCEA1ENSGALG00000015274Gallus gallus
 TCEA1ENSG00000187735Homo sapiens
 Tcea1ENSMUSG00000033813Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tcea2 / transcription elongation factor A (SII), 2 / Q15560* / Q9QVN7* / transcription elongation factor A2*ENSDARG0000001292763
tcea3 / transcription elongation factor A (SII), 3 / P23881* / O75764* / transcription elongation factor A3* / Transcription elongation factor A protein 3 *ENSDARG0000000472459
BX276105.3 / Q8N8B7* / TCEANC* / transcription elongation factor A N-terminal and central domain containing*ENSDARG0000011585619


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal
 IPR035100  Transcription elongation factor, IIS-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006414 translational elongation IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003746 translation elongation factor activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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