ENSGALG00000015274


Gallus gallus

Features
Gene ID: ENSGALG00000015274
  
Biological name :TCEA1
  
Synonyms : TCEA1 / transcription elongation factor A1
  
Possible biological names infered from orthology : P10711 / P23193 / Transcription elongation factor A protein 1
  
Species: Gallus gallus
  
Chr. number: 2
Strand: -1
Band:
Gene start: 110679668
Gene end: 110705058
  
Corresponding Affymetrix probe sets: Gga.1853.1.S1_s_at (Chicken Array)   GgaAffx.13179.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000024609
Ensembl peptide - ENSGALP00000044127
NCBI entrez gene - 421119     See in Manteia.
RefSeq - XM_015282663
RefSeq - NM_001006387
RefSeq Peptide - NP_001006387
swissprot - Q5ZHQ8
swissprot - F1NP36
Ensembl - ENSGALG00000015274
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tcea1ENSDARG00000003531Danio rerio
 TCEA1ENSG00000187735Homo sapiens
 Tcea1ENSMUSG00000033813Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TCEA2 / transcription elongation factor A2 / Q15560* / Q9QVN7* / transcription elongation factor A (SII), 2*ENSGALG0000000597668
TCEANC / transcription elongation factor A N-terminal and central domain containing / Q3US16* / Q8N8B7* / Transcription elongation factor A N-terminal and central domain-containing protein *ENSGALG0000001658132


Protein motifs (from Interpro)
Interpro ID Name
 IPR001222  Zinc finger, TFIIS-type
 IPR003617  Transcription elongation factor, TFIIS/CRSP70, N-terminal, sub-type
 IPR003618  Transcription elongation factor S-II, central domain
 IPR006289  Transcription elongation factor, TFIIS
 IPR017923  Transcription factor IIS, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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