ENSDARG00000003599


Danio rerio

Features
Gene ID: ENSDARG00000003599
  
Biological name :rpl3
  
Synonyms : ribosomal protein L3 / rpl3
  
Possible biological names infered from orthology : 60S ribosomal protein L3 / P27659 / P39023
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 29867213
Gene end: 29871364
  
Corresponding Affymetrix probe sets: Dr.17536.2.S1_at (Zebrafish Array)   Dr.17536.2.S1_a_at (Zebrafish Array)   NM_001001590_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000003700
Ensembl peptide - ENSDARP00000118110
Ensembl peptide - ENSDARP00000149691
NCBI entrez gene - 322571     See in Manteia.
RefSeq - NM_001001590
RefSeq Peptide - NP_001001590
swissprot - F1QBR2
swissprot - Q5BJJ2
ZFIN ID - ZDB-GENE-030131-1291
Ensembl - ENSDARG00000003599
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL3ENSGALG00000012172Gallus gallus
 RPL3ENSG00000100316Homo sapiens
 Rpl3ENSMUSG00000060036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000597  Ribosomal protein L3
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR019926  Ribosomal protein L3, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0031017 exocrine pancreas development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary condensed , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000112 gut gut hypoplastic , abnormal
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 ZFA:0001094 whole organism whole organism quality , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001249 exocrine pancreas exocrine pancreas decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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