ENSGALG00000012172


Gallus gallus

Features
Gene ID: ENSGALG00000012172
  
Biological name :RPL3
  
Synonyms : ribosomal protein L3 / RPL3
  
Possible biological names infered from orthology : 60S ribosomal protein L3 / P27659 / P39023
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 50725888
Gene end: 50731685
  
Corresponding Affymetrix probe sets: GgaAffx.12395.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043998
Ensembl peptide - ENSGALP00000062551
Ensembl peptide - ENSGALP00000062321
Ensembl peptide - ENSGALP00000062239
Ensembl peptide - ENSGALP00000062217
Ensembl peptide - ENSGALP00000061371
Ensembl peptide - ENSGALP00000054054
Ensembl peptide - ENSGALP00000047461
Ensembl peptide - ENSGALP00000029968
NCBI entrez gene - 418016     See in Manteia.
RefSeq - NM_001006241
RefSeq Peptide - NP_001006241
swissprot - A0A1L1RTR1
swissprot - A0A1L1RRE0
swissprot - A0A1D5PMH6
swissprot - A0A1D5P455
swissprot - A0A1D5NUI1
swissprot - A0A1L1RUP9
swissprot - Q5ZJZ2
swissprot - A0A1L1RU17
Ensembl - ENSGALG00000012172
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl3ENSDARG00000003599Danio rerio
 RPL3ENSG00000100316Homo sapiens
 Rpl3ENSMUSG00000060036Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RPL3L / 60S ribosomal protein L3-like / Q92901* / ribosomal protein L3 like*ENSGALG0000000545877


Protein motifs (from Interpro)
Interpro ID Name
 IPR000597  Ribosomal protein L3
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR019926  Ribosomal protein L3, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0071353 cellular response to interleukin-4 IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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