ENSMUSG00000060036


Mus musculus

Features
Gene ID: ENSMUSG00000060036
  
Biological name :Rpl3
  
Synonyms : 60S ribosomal protein L3 / P27659 / Rpl3
  
Possible biological names infered from orthology : P39023 / ribosomal protein L3
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: E1
Gene start: 80077791
Gene end: 80091868
  
Corresponding Affymetrix probe sets: 10430669 (MoGene1.0st)   10499879 (MoGene1.0st)   10499881 (MoGene1.0st)   10515154 (MoGene1.0st)   10546054 (MoGene1.0st)   10598721 (MoGene1.0st)   10600324 (MoGene1.0st)   1449323_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000139467
Ensembl peptide - ENSMUSP00000155250
Ensembl peptide - ENSMUSP00000140228
Ensembl peptide - ENSMUSP00000080354
NCBI entrez gene - 27367     See in Manteia.
MGI - MGI:1351605
RefSeq - NM_013762
RefSeq - XM_006521036
RefSeq Peptide - NP_038790
swissprot - A0A087WQK0
swissprot - P27659
swissprot - A0A087WNS0
Ensembl - ENSMUSG00000060036
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl3ENSDARG00000003599Danio rerio
 RPL3ENSGALG00000012172Gallus gallus
 RPL3ENSG00000100316Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rpl3l / ribosomal protein L3-like / Q92901*ENSMUSG0000000250076


Protein motifs (from Interpro)
Interpro ID Name
 IPR000597  Ribosomal protein L3
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR019926  Ribosomal protein L3, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0071353 cellular response to interleukin-4 IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0008097 5S rRNA binding IEA


Pathways (from Reactome)
Pathway description
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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