ENSDARG00000003877


Danio rerio

Features
Gene ID: ENSDARG00000003877
  
Biological name :pbrm1
  
Synonyms : pbrm1 / polybromo 1
  
Possible biological names infered from orthology : Protein polybromo-1 / Q86U86 / Q8BSQ9
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 3909756
Gene end: 3959889
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000045970
Ensembl peptide - ENSDARP00000149239
Ensembl peptide - ENSDARP00000136629
NCBI entrez gene - 565366     See in Manteia.
RefSeq - XM_009305787
swissprot - E7F8D8
swissprot - A0A0R4IQI8
ZFIN ID - ZDB-GENE-080926-4
Ensembl - ENSDARG00000003877
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PBRM1ENSGALG00000037455Gallus gallus
 PBRM1ENSG00000163939Homo sapiens
 Pbrm1ENSMUSG00000042323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pbrm1l / polybromo 1, like / PBRM1* / Q86U86* / Q8BSQ9* / polybromo 1* / Protein polybromo-1 *ENSDARG0000007703867


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR001487  Bromodomain
 IPR009071  High mobility group box domain
 IPR018359  Bromodomain, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016586 RSC-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr