ENSMUSG00000042323


Mus musculus

Features
Gene ID: ENSMUSG00000042323
  
Biological name :Pbrm1
  
Synonyms : Pbrm1 / Protein polybromo-1 / Q8BSQ9
  
Possible biological names infered from orthology : polybromo 1 / Q86U86
  
Species: Mus musculus
  
Chr. number: 14
Strand: 1
Band: B
Gene start: 31019138
Gene end: 31121592
  
Corresponding Affymetrix probe sets: 10413670 (MoGene1.0st)   10413695 (MoGene1.0st)   10413697 (MoGene1.0st)   1426877_a_at (Mouse Genome 430 2.0 Array)   1426878_at (Mouse Genome 430 2.0 Array)   1427266_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000107721
Ensembl peptide - ENSMUSP00000087682
Ensembl peptide - ENSMUSP00000107723
Ensembl peptide - ENSMUSP00000123546
Ensembl peptide - ENSMUSP00000123518
Ensembl peptide - ENSMUSP00000122805
Ensembl peptide - ENSMUSP00000120549
Ensembl peptide - ENSMUSP00000119722
Ensembl peptide - ENSMUSP00000115505
Ensembl peptide - ENSMUSP00000107734
Ensembl peptide - ENSMUSP00000107727
Ensembl peptide - ENSMUSP00000107724
Ensembl peptide - ENSMUSP00000022471
Ensembl peptide - ENSMUSP00000022474
Ensembl peptide - ENSMUSP00000060476
NCBI entrez gene - 66923     See in Manteia.
MGI - MGI:1923998
RefSeq - XM_017316160
RefSeq - XM_017316145
RefSeq - XM_017316146
RefSeq - XM_017316147
RefSeq - XM_017316148
RefSeq - XM_017316149
RefSeq - XM_017316150
RefSeq - XM_017316151
RefSeq - XM_017316152
RefSeq - XM_017316153
RefSeq - XM_017316154
RefSeq - XM_017316155
RefSeq - XM_017316156
RefSeq - XM_017316157
RefSeq - XM_017316158
RefSeq - XM_017316159
RefSeq - NM_001081251
RefSeq - XM_006519402
RefSeq - XM_006519403
RefSeq - XM_006519405
RefSeq - XM_006519406
RefSeq - XM_006519407
RefSeq - XM_006519408
RefSeq - XM_006519409
RefSeq - XM_006519410
RefSeq - XM_006519411
RefSeq - XM_006519412
RefSeq - XM_006519413
RefSeq - XM_006519414
RefSeq - XM_006519415
RefSeq - XM_006519416
RefSeq - XM_006519417
RefSeq - XM_006519418
RefSeq - XM_006519419
RefSeq - XM_006519420
RefSeq - XM_006519421
RefSeq - XM_006519422
RefSeq - XM_006519423
RefSeq - XM_006519424
RefSeq - XM_006519425
RefSeq - XM_006519426
RefSeq - XM_006519427
RefSeq - XM_017316137
RefSeq - XM_017316138
RefSeq - XM_017316139
RefSeq - XM_017316140
RefSeq - XM_017316141
RefSeq - XM_017316142
RefSeq - XM_017316143
RefSeq - XM_017316144
RefSeq Peptide - NP_001074720
swissprot - E9Q7L2
swissprot - E9Q4Y5
swissprot - D6RIL0
swissprot - D6RI94
swissprot - D3Z3R4
swissprot - D3Z1W6
swissprot - D3Z1N4
swissprot - D3Z1M8
swissprot - F6THL5
swissprot - F8VQD1
swissprot - D3YYG4
swissprot - D3YYF2
swissprot - E9Q7L3
swissprot - Q8BSQ9
Ensembl - ENSMUSG00000042323
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pbrm1ENSDARG00000003877Danio rerio
 pbrm1lENSDARG00000077038Danio rerio
 PBRM1ENSGALG00000037455Gallus gallus
 PBRM1ENSG00000163939Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR001487  Bromodomain
 IPR009071  High mobility group box domain
 IPR018359  Bromodomain, conserved site
 IPR036427  Bromodomain-like superfamily
 IPR036910  High mobility group box domain superfamily
 IPR037382  Remodelling complex subunit Rsc/polybromo


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001890 placenta development IMP
 biological_processGO:0001974 blood vessel remodeling TAS
 biological_processGO:0003007 heart morphogenesis TAS
 biological_processGO:0003349 epicardium-derived cardiac endothelial cell differentiation TAS
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007507 heart development IMP
 biological_processGO:0008285 negative regulation of cell proliferation ISS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated TAS
 biological_processGO:0060948 cardiac vascular smooth muscle cell development TAS
 biological_processGO:0060979 vasculogenesis involved in coronary vascular morphogenesis TAS
 cellular_componentGO:0000776 kinetochore IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0016586 RSC-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000279 ventricular hypoplasia "reduction in cell number of one or both of the two lower chambers of the heart" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, J:61790]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0000281 abnormal ventricular septum morphology "abnormality in the wall between the ventricles of the heart, usually incomplete closure" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:53370]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0000601 small liver "reduced size of the liver" [J:23170]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0001716 abnormal placental labyrinth "malformed structure where embryonic blood vessels are surrounded by trophoblast cells and maternal blood" [J:23171]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0003641 small lung "reduced size of the lung relative to normal" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:95332]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0004255 abnormal spongiotrophoblast layer morphology "anomaly in the structure of the outer structural layer of the rodent placenta" [PMID:11433360]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0005033 abnormal trophoblast cells "anomaly of the cells covering the blastocyst that erode the uterine mucosa and contribute to the formation of the placenta " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, dlb:Donna Burkart , Mouse Genome Informatics Curator, J:57761]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

 MP:0005095 decreased T cell proliferation "reduced clonal expansion of naive T cells in response to stimuli" [Immunobiology , The Immune System in Health and Disease:ISBN 0-8153-1691-7]
Show

Allelic Composition: Mtdhtm1.2Dsar/Mtdhtm1.2Dsar
Genetic Background: either: B6.129(FVB)-Mtdhtm1.2Dsar or (129S1/Sv * 129X1/SvJ * C57BL/6 * FVB/N)

 MP:0008092 abnormal T-helper 2 cell differentiation "atypical production of or inability to produce the type of T-helper cell whose cytokine production promotes defense against extracellular parasites and humoral immune responses typical of allergy" [CL:0000546, ISBN:0781735149, MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Mtdhtm1.2Dsar/Mtdhtm1.2Dsar
Genetic Background: either: B6.129(FVB)-Mtdhtm1.2Dsar or (129S1/Sv * 129X1/SvJ * C57BL/6 * FVB/N)

 MP:0008660 increased interleukin-10 secretion "increase in the production or release of a cytokine produced by a variety of cell types, including T-cells, monocytes, dendritic cells and epithelial cells that exerts a variety of effects on immunoregulation and inflammation" [MESH:D12.644.276.374.465.510]
Show

Allelic Composition: Mtdhtm1.2Dsar/Mtdhtm1.2Dsar
Genetic Background: either: B6.129(FVB)-Mtdhtm1.2Dsar or (129S1/Sv * 129X1/SvJ * C57BL/6 * FVB/N)

 MP:0008699 increased interleukin-4 secretion "increase in the production or release of a soluble factor produced by activated T-cells that induces the expression of MHC class II genes and FC receptors on B-cells and causes their proliferation and differentiation; it also acts on T-cells, mast cells and several other hematopoietic lineage cells" [MESH:D12.644.276.374.465.504]
Show

Allelic Composition: Mtdhtm1.2Dsar/Mtdhtm1.2Dsar
Genetic Background: either: B6.129(FVB)-Mtdhtm1.2Dsar or (129S1/Sv * 129X1/SvJ * C57BL/6 * FVB/N)

 MP:0011099 complete lethality throughout fetal growth and development "death of all organisms of a given genotype in a population between the completion of organogenesis and birth (Mus: E14 to approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Prf1tm1Clrk/Prf1tm1Clrk
Genetic Background: C.129S7(B6)-Prf1tm1Clrk

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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