ENSG00000163939


Homo sapiens

Features
Gene ID: ENSG00000163939
  
Biological name :PBRM1
  
Synonyms : PBRM1 / polybromo 1 / Q86U86
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.1
Gene start: 52545352
Gene end: 52685917
  
Corresponding Affymetrix probe sets: 220355_s_at (Human Genome U133 Plus 2.0 Array)   221212_x_at (Human Genome U133 Plus 2.0 Array)   223238_s_at (Human Genome U133 Plus 2.0 Array)   223400_s_at (Human Genome U133 Plus 2.0 Array)   224152_s_at (Human Genome U133 Plus 2.0 Array)   232613_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000397399
Ensembl peptide - ENSP00000389390
Ensembl peptide - ENSP00000397662
Ensembl peptide - ENSP00000416851
Ensembl peptide - ENSP00000412401
Ensembl peptide - ENSP00000411895
Ensembl peptide - ENSP00000409939
Ensembl peptide - ENSP00000404635
Ensembl peptide - ENSP00000404579
Ensembl peptide - ENSP00000296302
Ensembl peptide - ENSP00000338302
Ensembl peptide - ENSP00000349213
Ensembl peptide - ENSP00000378307
Ensembl peptide - ENSP00000386529
Ensembl peptide - ENSP00000386593
Ensembl peptide - ENSP00000386601
Ensembl peptide - ENSP00000386643
Ensembl peptide - ENSP00000387775
NCBI entrez gene - 55193     See in Manteia.
OMIM - 606083
RefSeq - XM_017006766
RefSeq - XM_017006754
RefSeq - XM_017006755
RefSeq - XM_017006756
RefSeq - XM_017006757
RefSeq - XM_017006758
RefSeq - XM_017006759
RefSeq - XM_017006760
RefSeq - XM_017006761
RefSeq - XM_017006762
RefSeq - XM_017006763
RefSeq - XM_017006764
RefSeq - XM_017006765
RefSeq - NM_018313
RefSeq - XM_005265279
RefSeq - XM_005265280
RefSeq - XM_005265282
RefSeq - XM_005265283
RefSeq - XM_011533900
RefSeq - XM_011533902
RefSeq - XM_011533903
RefSeq - XM_017006725
RefSeq - XM_017006726
RefSeq - XM_017006727
RefSeq - XM_017006728
RefSeq - XM_017006729
RefSeq - XM_017006730
RefSeq - XM_017006731
RefSeq - XM_017006732
RefSeq - XM_017006733
RefSeq - XM_017006734
RefSeq - XM_017006735
RefSeq - XM_017006736
RefSeq - XM_017006737
RefSeq - XM_017006738
RefSeq - XM_017006739
RefSeq - XM_017006740
RefSeq - XM_017006741
RefSeq - XM_017006742
RefSeq - XM_017006743
RefSeq - XM_017006744
RefSeq - XM_017006745
RefSeq - XM_017006746
RefSeq - XM_017006747
RefSeq - XM_017006748
RefSeq - XM_017006749
RefSeq - XM_017006750
RefSeq - XM_017006751
RefSeq - XM_017006752
RefSeq - XM_017006753
RefSeq Peptide - NP_060783
RefSeq Peptide - NP_851385
RefSeq Peptide - NP_001337004
swissprot - C9JCJ2
swissprot - C9J9L6
swissprot - C9J409
swissprot - H0Y5B5
swissprot - C9J053
swissprot - E7EVG2
swissprot - Q86U86
swissprot - C9JQF1
swissprot - C9JPI5
Ensembl - ENSG00000163939
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pbrm1ENSDARG00000003877Danio rerio
 pbrm1lENSDARG00000077038Danio rerio
 PBRM1ENSGALG00000037455Gallus gallus
 Pbrm1ENSMUSG00000042323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR001487  Bromodomain
 IPR009071  High mobility group box domain
 IPR018359  Bromodomain, conserved site
 IPR036427  Bromodomain-like superfamily
 IPR036910  High mobility group box domain superfamily
 IPR037382  Remodelling complex subunit Rsc/polybromo


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000278 mitotic cell cycle TAS
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008285 negative regulation of cell proliferation IMP
 cellular_componentGO:0000228 nuclear chromosome NAS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016586 RSC-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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