ENSGALG00000037455


Gallus gallus

Features
Gene ID: ENSGALG00000037455
  
Biological name :PBRM1
  
Synonyms : PBRM1 / protein polybromo-1
  
Possible biological names infered from orthology : polybromo 1 / Q86U86 / Q8BSQ9
  
Species: Gallus gallus
  
Chr. number: 12
Strand: -1
Band:
Gene start: 719423
Gene end: 885114
  
Corresponding Affymetrix probe sets: Gga.18520.1.S1_at (Chicken Array)   Gga.3045.1.S1_a_at (Chicken Array)   GgaAffx.24570.1.A1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043676
Ensembl peptide - ENSGALP00000056952
Ensembl peptide - ENSGALP00000052958
Ensembl peptide - ENSGALP00000045684
NCBI entrez gene - 396074     See in Manteia.
RefSeq - XM_015292731
RefSeq - XM_015292726
RefSeq - XM_015292727
RefSeq - XM_015292728
RefSeq - XM_015292729
RefSeq - XM_015292730
RefSeq - NM_205165
RefSeq - XM_015292724
RefSeq - XM_015292725
RefSeq Peptide - NP_990496
swissprot - A0A1D5PVI2
swissprot - A0A1D5PJG5
swissprot - A0A1D5NZ69
swissprot - A0A1D5NTL9
Ensembl - ENSGALG00000037455
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pbrm1ENSDARG00000003877Danio rerio
 pbrm1lENSDARG00000077038Danio rerio
 PBRM1ENSG00000163939Homo sapiens
 Pbrm1ENSMUSG00000042323Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001025  Bromo adjacent homology (BAH) domain
 IPR001487  Bromodomain
 IPR009071  High mobility group box domain
 IPR018359  Bromodomain, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0008285 negative regulation of cell proliferation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0016586 RSC-type complex IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr