Manteia

ENSDARG00000003970

Danio rerio

Features

Gene ID:	ENSDARG00000003970

Biological name :	trim35-13

Synonyms :	trim35-13 / tripartite motif containing 35-13

Possible biological names infered from orthology :	Q9UPQ4 / TRIM35 / tripartite motif containing 35

Species:	Danio rerio

Chr. number:	3
Strand:	-1
Band:
Gene start:	52607039
Gene end:	52614747

Corresponding Affymetrix probe sets:

Cross references:	Ensembl peptide - ENSDARP00000128606 swissprot - X1WEF5 ZFIN ID - ZDB-GENE-110920-5 Ensembl - ENSDARG00000003970

See co-cited genes in PubMed

Ortholog prediction (from Ensembl)

Ortholog name	ID	Species
TRIM35	ENSGALG00000016595	Gallus gallus
Q9UPQ4	ENSG00000104228	Homo sapiens
Trim35	ENSMUSG00000022043	Mus musculus

Paralog prediction (from Ensembl)

Paralog name	ID	Similarity(%)
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101055	42
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000033071	41
trim35-39 / tripartite motif containing 35-39 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000071241	41
trim35-21 / tripartite motif containing 35-21 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102303	40
CR394535.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000103193	40
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099684	40
si:ch211-175l6.2 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000100721	40
trim35-23 / tripartite motif containing 35-23 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102368	40
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000099639	40
trim35-3 / tripartite motif containing 35-3 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000052255	39
si:ch1073-324l1.1 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000095913	39
trim35-22 / tripartite motif containing 35-22 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102264	39
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000040230	39
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000058958	39
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000102219	39
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000070847	39
trim35-12 / tripartite motif containing 35-12 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000101264	39
CU571315.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000031534	39
trim35-33 / tripartite motif containing 35-33 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000060838	37
zmp:0000001316 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*	ENSDARG00000092407	37

Protein motifs (from Interpro)

Interpro ID	Name
IPR000315	B-box-type zinc finger
IPR001841	Zinc finger, RING-type
IPR001870	B30.2/SPRY domain
IPR003877	SPRY domain
IPR003879	Butyrophylin-like, SPRY domain
IPR006574	SPRY-associated
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
IPR017907	Zinc finger, RING-type, conserved site
IPR018957	Zinc finger, C3HC4 RING-type

Gene Ontology (GO)

Type	GO ID	Term	Ev.Code
cellular_component	GO:0005622	intracellular	IEA
molecular_function	GO:0008270	zinc ion binding	IEA
molecular_function	GO:0046872	metal ion binding	IEA

Pathways (from Reactome)

Pathway description

No match

Phenotype (from MGI, Zfin or HPO)

Phenotype

Definition

Genetic BG

No match

Interacting proteins (from Reactome)

Interactor ID

Name

Interaction type

No match

1 s.

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		© Olivier Tassy / Olivier Pourquie 2007-2024 contact: otassy@igbmc.fr