ENSDARG00000004280


Danio rerio

Features
Gene ID: ENSDARG00000004280
  
Biological name :seh1l
  
Synonyms : Q6TGU2 / seh1l / SEH1-like (S. cerevisiae)
  
Possible biological names infered from orthology : Nucleoporin SEH1 / Q8R2U0 / Q96EE3 / SEH1 like nucleoporin
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 12406583
Gene end: 12431988
  
Corresponding Affymetrix probe sets: Dr.20191.1.S1_at (Zebrafish Array)   NM_199923_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125785
Ensembl peptide - ENSDARP00000125892
Ensembl peptide - ENSDARP00000003173
NCBI entrez gene - 334749     See in Manteia.
RefSeq - NM_199923
RefSeq Peptide - NP_956217
swissprot - I3ISK9
swissprot - I3ISB3
swissprot - Q6TGU2
ZFIN ID - ZDB-GENE-030131-6689
Ensembl - ENSDARG00000004280
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SEH1LENSGALG00000013872Gallus gallus
 SEH1LENSG00000085415Homo sapiens
 Seh1lENSMUSG00000079614Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR020472  G-protein beta WD-40 repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006999 nuclear pore organization ISS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0007059 chromosome segregation IEA
 biological_processGO:0007080 mitotic metaphase plate congression ISS
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0051028 mRNA transport IEA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0051315 attachment of mitotic spindle microtubules to kinetochore ISS
 biological_processGO:1904263 positive regulation of TORC1 signaling IEA
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore ISS
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005643 nuclear pore IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane ISS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031080 nuclear pore outer ring ISS
 molecular_functionGO:0005198 structural molecule activity IEA


Pathways (from Reactome)
Pathway description
Amplification of signal from unattached kinetochores via a MAD2 inhibitory signal
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
Separation of Sister Chromatids
Resolution of Sister Chromatid Cohesion
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs
RHO GTPases Activate Formins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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