ENSDARG00000004706


Danio rerio

Features
Gene ID: ENSDARG00000004706
  
Biological name :syf2
  
Synonyms : Q6DGP2 / syf2 / SYF2 pre-mRNA-splicing factor
  
Possible biological names infered from orthology : O95926 / Pre-mRNA-splicing factor SYF2 / Q9D198
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 45431660
Gene end: 45443008
  
Corresponding Affymetrix probe sets: Dr.11191.1.S1_at (Zebrafish Array)   NM_001003437_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000090723
NCBI entrez gene - 445043     See in Manteia.
RefSeq - NM_001003437
RefSeq Peptide - NP_001003437
swissprot - Q6DGP2
ZFIN ID - ZDB-GENE-040801-170
Ensembl - ENSDARG00000004706
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SYF2ENSGALG00000013639Gallus gallus
 SYF2ENSG00000117614Homo sapiens
 Syf2ENSMUSG00000028821Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013260  mRNA splicing factor SYF2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome ISS
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism apoptotic , abnormal
whole organism viability , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk bent , abnormal
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 ZFA:0001117 post-vent region post-vent region increased curvature , abnormal
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 ZFA:0005314 blood vessel blood vessel decreased amount , abnormal
Show

 ZFA:0009248 neuron neuron decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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