ENSG00000117614


Homo sapiens

Features
Gene ID: ENSG00000117614
  
Biological name :SYF2
  
Synonyms : O95926 / SYF2 / SYF2 pre-mRNA splicing factor
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.11
Gene start: 25222679
Gene end: 25232502
  
Corresponding Affymetrix probe sets: 1559979_at (Human Genome U133 Plus 2.0 Array)   202553_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000236273
Ensembl peptide - ENSP00000346330
NCBI entrez gene - 25949     See in Manteia.
OMIM - 607090
RefSeq - NM_015484
RefSeq - NM_207170
RefSeq Peptide - NP_056299
RefSeq Peptide - NP_997053
swissprot - O95926
Ensembl - ENSG00000117614
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syf2ENSDARG00000004706Danio rerio
 SYF2ENSGALG00000013639Gallus gallus
 Syf2ENSMUSG00000028821Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013260  mRNA splicing factor SYF2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007095 mitotic G2 DNA damage checkpoint IEA
 biological_processGO:0007369 gastrulation IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048568 embryonic organ development IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus NAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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