ENSGALG00000013639


Gallus gallus

Features
Gene ID: ENSGALG00000013639
  
Biological name :SYF2
  
Synonyms : SYF2 / SYF2 pre-mRNA splicing factor
  
Possible biological names infered from orthology : O95926 / Pre-mRNA-splicing factor SYF2 / Q9D198
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 2404806
Gene end: 2407364
  
Corresponding Affymetrix probe sets: Gga.7857.1.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001891
NCBI entrez gene - 419593     See in Manteia.
RefSeq - NM_001257294
RefSeq Peptide - NP_001244223
swissprot - F1P0B5
Ensembl - ENSGALG00000013639
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 syf2ENSDARG00000004706Danio rerio
 SYF2ENSG00000117614Homo sapiens
 Syf2ENSMUSG00000028821Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013260  mRNA splicing factor SYF2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0007095 mitotic G2 DNA damage checkpoint IEA
 biological_processGO:0007369 gastrulation IEA
 biological_processGO:0048568 embryonic organ development IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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