ENSDARG00000005643


Danio rerio

Features
Gene ID: ENSDARG00000005643
  
Biological name :gcat
  
Synonyms : gcat / glycine C-acetyltransferase
  
Possible biological names infered from orthology : 2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial / O75600 / O88986
  
Species: Danio rerio
  
Chr. number: 3
Strand: 1
Band:
Gene start: 25990052
Gene end: 25998243
  
Corresponding Affymetrix probe sets: Dr.2301.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000020361
NCBI entrez gene - 402822     See in Manteia.
RefSeq - NM_001172554
RefSeq Peptide - NP_001166025
swissprot - F6P2R4
ZFIN ID - ZDB-GENE-060518-3
Ensembl - ENSDARG00000005643
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 GCATENSGALG00000012312Gallus gallus
 GCATENSG00000100116Homo sapiens
 GcatENSMUSG00000006378Mus musculus
 GcatENSMUSG00000116378Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
alas2 / Q9YHT4 / aminolevulinate, delta-, synthase 2 / P08680* / P22557* / 5-aminolevulinate synthase 2* / 5-aminolevulinate synthase, erythroid-specific, mitochondrial *ENSDARG0000003864330
alas1 / aminolevulinate, delta-, synthase 1 / P13196* / Q8VC19* / 5-aminolevulinate synthase 1* / 5-aminolevulinate synthase, nonspecific, mitochondrial *ENSDARG0000002105930


Protein motifs (from Interpro)
Interpro ID Name
 IPR001917  Aminotransferase, class-II, pyridoxal-phosphate binding site
 IPR004839  Aminotransferase, class I/classII
 IPR011282  2-amino-3-ketobutyrate coenzyme A ligase
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006567 threonine catabolic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0009058 biosynthetic process IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0008890 glycine C-acetyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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