ENSDARG00000006242


Danio rerio

Features
Gene ID: ENSDARG00000006242
  
Biological name :ptp4a1
  
Synonyms : protein tyrosine phosphatase type IVA, member 1 / ptp4a1
  
Possible biological names infered from orthology : protein tyrosine phosphatase 4a1 / Q63739 / Q93096
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 11267493
Gene end: 11274919
  
Corresponding Affymetrix probe sets: Dr.4179.1.S1_at (Zebrafish Array)   NM_001007775_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000126441
Ensembl peptide - ENSDARP00000145165
Ensembl peptide - ENSDARP00000142090
Ensembl peptide - ENSDARP00000139705
Ensembl peptide - ENSDARP00000137525
Ensembl peptide - ENSDARP00000023049
Ensembl peptide - ENSDARP00000106040
Ensembl peptide - ENSDARP00000124821
NCBI entrez gene - 493615     See in Manteia.
RefSeq - NM_001007775
RefSeq Peptide - NP_001007776
swissprot - A0A0R4IXJ0
swissprot - A0A0R4IN05
swissprot - F1QSC9
swissprot - F8W283
swissprot - K7DYB3
swissprot - E7FA71
swissprot - A0A140LFR6
ZFIN ID - ZDB-GENE-041121-11
Ensembl - ENSDARG00000006242
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTP4A1ENSGALG00000016271Gallus gallus
 PTP4A1ENSG00000112245Homo sapiens
 Ptp4a1ENSMUSG00000026064Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptp4a2b / protein tyrosine phosphatase type IVA, member 2b / PTP4A2* / O70274* / Q12974* / Protein tyrosine phosphatase type IVA 2 * / protein tyrosine phosphatase type IVA, member 2*ENSDARG0000003567679
ptp4a2a / protein tyrosine phosphatase type IVA, member 2a / PTP4A2* / O70274* / Q12974* / Protein tyrosine phosphatase type IVA 2 * / protein tyrosine phosphatase type IVA, member 2*ENSDARG0000008744379
ptp4a3 / protein tyrosine phosphatase type IVA, member 3 / O75365* / Q9D658* / Protein tyrosine phosphatase type IVA 3 *ENSDARG0000003999775
si:ch211-251p5.5 / O75365* / PTP4A3* / Q9D658* / Protein tyrosine phosphatase type IVA 3 * / protein tyrosine phosphatase type IVA, member 3*ENSDARG0000005481466


Protein motifs (from Interpro)
Interpro ID Name
 IPR000242  PTP type protein phosphatase
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0030335 positive regulation of cell migration IBA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IEA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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