ENSDARG00000035676


Danio rerio

Features
Gene ID: ENSDARG00000035676
  
Biological name :ptp4a2b
  
Synonyms : protein tyrosine phosphatase type IVA, member 2b / ptp4a2b
  
Possible biological names infered from orthology : O70274 / Protein tyrosine phosphatase type IVA 2 / protein tyrosine phosphatase type IVA, member 2 / PTP4A2 / Q12974
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 35455172
Gene end: 35492784
  
Corresponding Affymetrix probe sets: Dr.3996.1.A1_at (Zebrafish Array)   NM_001024098_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000051744
Ensembl peptide - ENSDARP00000121313
Ensembl peptide - ENSDARP00000144262
NCBI entrez gene - 334483     See in Manteia.
RefSeq - NM_001024098
RefSeq Peptide - NP_001019269
swissprot - Q1LUB0
swissprot - Q5U3R3
swissprot - Q6TLG9
ZFIN ID - ZDB-GENE-041114-111
Ensembl - ENSDARG00000035676
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PTP4A2ENSGALG00000003265Gallus gallus
 PTP4A2ENSG00000184007Homo sapiens
 O70274ENSMUSG00000028788Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ptp4a2a / protein tyrosine phosphatase type IVA, member 2a / PTP4A2* / O70274* / Q12974* / Protein tyrosine phosphatase type IVA 2 * / protein tyrosine phosphatase type IVA, member 2*ENSDARG0000008744382
ptp4a1 / protein tyrosine phosphatase type IVA, member 1 / Q63739* / Q93096* / protein tyrosine phosphatase 4a1*ENSDARG0000000624281
ptp4a3 / protein tyrosine phosphatase type IVA, member 3 / O75365* / Q9D658* / Protein tyrosine phosphatase type IVA 3 *ENSDARG0000003999768
si:ch211-251p5.5 / O75365* / PTP4A3* / Q9D658* / Protein tyrosine phosphatase type IVA 3 * / protein tyrosine phosphatase type IVA, member 3*ENSDARG0000005481463


Protein motifs (from Interpro)
Interpro ID Name
 IPR000340  Dual specificity phosphatase, catalytic domain
 IPR000387  Tyrosine specific protein phosphatases domain
 IPR003595  Protein-tyrosine phosphatase, catalytic
 IPR029021  Protein-tyrosine phosphatase-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0016311 dephosphorylation IEA
 biological_processGO:0035335 peptidyl-tyrosine dephosphorylation IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004725 protein tyrosine phosphatase activity IBA
 molecular_functionGO:0008138 protein tyrosine/serine/threonine phosphatase activity IEA
 molecular_functionGO:0016791 phosphatase activity IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr