ENSDARG00000006316


Danio rerio

Features
Gene ID: ENSDARG00000006316
  
Biological name :rpl23a
  
Synonyms : ribosomal protein L23a / rpl23a
  
Possible biological names infered from orthology : Gm6096 / P62750 / P62751
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 26071874
Gene end: 26074640
  
Corresponding Affymetrix probe sets: Dr.1425.1.S1_at (Zebrafish Array)   NM_001001593_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118814
Ensembl peptide - ENSDARP00000149232
Ensembl peptide - ENSDARP00000006624
NCBI entrez gene - 335539     See in Manteia.
RefSeq - NM_001001593
RefSeq Peptide - NP_001001593
swissprot - F1Q9T9
swissprot - F1QGI3
ZFIN ID - ZDB-GENE-030131-7479
Ensembl - ENSDARG00000006316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL23AENSGALG00000003966Gallus gallus
 P62750ENSG00000198242Homo sapiens
 Gm6096ENSMUSG00000078380Mus musculus
 P62751ENSMUSG00000058546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001014  Ribosomal protein L23/L25, conserved site
 IPR005633  Ribosomal protein L23/L25, N-terminal
 IPR012678  Ribosomal protein L23/L15e core domain superfamily
 IPR013025  Ribosomal protein L25/L23
 IPR019985  Ribosomal protein L23


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IBA
 biological_processGO:0031016 pancreas development IMP
 biological_processGO:0051726 regulation of cell cycle IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000140 pancreas pancreas decreased volume , abnormal
pancreas neoplastic , abnormal
pancreas neoplasm increased occurrence , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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