ENSGALG00000003966


Gallus gallus

Features
Gene ID: ENSGALG00000003966
  
Biological name :RPL23A
  
Synonyms : ribosomal protein L23a / RPL23A
  
Possible biological names infered from orthology : Gm6096 / P62750 / P62751
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 5802111
Gene end: 5804506
  
Corresponding Affymetrix probe sets: Gga.1014.2.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000006308
Ensembl peptide - ENSGALP00000060535
Ensembl peptide - ENSGALP00000057516
Ensembl peptide - ENSGALP00000054736
Ensembl peptide - ENSGALP00000044791
NCBI entrez gene - 417574     See in Manteia.
RefSeq - XM_415820
swissprot - E1BS06
swissprot - A0A1L1RP25
swissprot - A0A1D5PX26
swissprot - A0A1D5PPD7
swissprot - A0A1D5NWP9
Ensembl - ENSGALG00000003966
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl23aENSDARG00000006316Danio rerio
 P62750ENSG00000198242Homo sapiens
 Gm6096ENSMUSG00000078380Mus musculus
 P62751ENSMUSG00000058546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001014  Ribosomal protein L23/L25, conserved site
 IPR005633  Ribosomal protein L23/L25, N-terminal
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR012678  Ribosomal protein L23/L15e core domain superfamily
 IPR013025  Ribosomal protein L25/L23
 IPR019985  Ribosomal protein L23


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000027 ribosomal large subunit assembly IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0008283 cell proliferation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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