ENSDARG00000006434


Danio rerio

Features
Gene ID: ENSDARG00000006434
  
Biological name :polr1e
  
Synonyms : polr1e / polymerase (RNA) I polypeptide E
  
Possible biological names infered from orthology : Q8K202 / Q9GZS1 / RNA polymerase I subunit E
  
Species: Danio rerio
  
Chr. number: 1
Strand: -1
Band:
Gene start: 19637312
Gene end: 19648227
  
Corresponding Affymetrix probe sets: Dr.13809.1.S1_at (Zebrafish Array)   NM_001020704_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000054573
NCBI entrez gene - 553733     See in Manteia.
RefSeq - NM_001020704
RefSeq Peptide - NP_001018540
swissprot - Q501W9
ZFIN ID - ZDB-GENE-050522-251
Ensembl - ENSDARG00000006434
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR1EENSGALG00000005395Gallus gallus
 POLR1EENSG00000137054Homo sapiens
 Polr1eENSMUSG00000028318Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009668  RNA polymerase I associated factor, A49-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006360 transcription by RNA polymerase I IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005736 DNA-directed RNA polymerase I complex IBA
 molecular_functionGO:0001054 RNA polymerase I activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA


Pathways (from Reactome)
Pathway description
B-WICH complex positively regulates rRNA expression
RNA Polymerase I Transcription Initiation
RNA Polymerase I Promoter Escape
RNA Polymerase I Chain Elongation
RNA Polymerase I Transcription Termination


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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