ENSDARG00000007135


Danio rerio

Features
Gene ID: ENSDARG00000007135
  
Biological name :cnot3a
  
Synonyms : CCR4-NOT transcription complex, subunit 3a / cnot3a
  
Possible biological names infered from orthology : CCR4-NOT transcription complex subunit 3 / CNOT3 / O75175 / Q8K0V4
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 32110195
Gene end: 32128345
  
Corresponding Affymetrix probe sets: Dr.2028.1.A1_at (Zebrafish Array)   Dr.6919.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118084
Ensembl peptide - ENSDARP00000092876
NCBI entrez gene - 449540     See in Manteia.
RefSeq - NM_001328118
RefSeq - XM_005158349
RefSeq - XM_021466678
RefSeq Peptide - NP_001315047
swissprot - F1Q4L8
swissprot - E9QGK5
ZFIN ID - ZDB-GENE-040927-6
Ensembl - ENSDARG00000007135
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT3ENSG00000088038Homo sapiens
 Cnot3ENSMUSG00000035632Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot3b / CCR4-NOT transcription complex, subunit 3b / CNOT3* / O75175* / Q8K0V4* / CCR4-NOT transcription complex subunit 3*ENSDARG0000001984263


Protein motifs (from Interpro)
Interpro ID Name
 IPR007207  CCR4-Not complex component, Not N-terminal domain
 IPR007282  NOT2/NOT3/NOT5
 IPR012270  CCR4-NOT complex, subunit 3/ 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0017148 negative regulation of translation IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030015 CCR4-NOT core complex IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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