ENSDARG00000019842


Danio rerio

Features
Gene ID: ENSDARG00000019842
  
Biological name :cnot3b
  
Synonyms : CCR4-NOT transcription complex, subunit 3b / cnot3b
  
Possible biological names infered from orthology : CCR4-NOT transcription complex subunit 3 / CNOT3 / O75175 / Q8K0V4
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 10252052
Gene end: 10295173
  
Corresponding Affymetrix probe sets: Dr.6354.1.S1_at (Zebrafish Array)   Dr.6354.2.A1_a_at (Zebrafish Array)   Dr.6354.2.A1_x_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000025243
Ensembl peptide - ENSDARP00000121075
NCBI entrez gene - 327627     See in Manteia.
RefSeq - XM_009294029
RefSeq - XM_017352187
swissprot - Q1LUD8
swissprot - E9QCW3
ZFIN ID - ZDB-GENE-030131-5838
Ensembl - ENSDARG00000019842
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT3ENSG00000088038Homo sapiens
 Cnot3ENSMUSG00000035632Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot3a / CCR4-NOT transcription complex, subunit 3a / CNOT3* / O75175* / Q8K0V4* / CCR4-NOT transcription complex subunit 3*ENSDARG0000000713565


Protein motifs (from Interpro)
Interpro ID Name
 IPR007207  CCR4-Not complex component, Not N-terminal domain
 IPR007282  NOT2/NOT3/NOT5
 IPR012270  CCR4-NOT complex, subunit 3/ 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0017148 negative regulation of translation IBA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0030015 CCR4-NOT core complex IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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