ENSDARG00000007639


Danio rerio

Features
Gene ID: ENSDARG00000007639
  
Biological name :cnot4b
  
Synonyms : CCR4-NOT transcription complex, subunit 4b / cnot4b
  
Possible biological names infered from orthology : CCR4-NOT transcription complex subunit 4 / CNOT4 / O95628 / Q8BT14
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 12243698
Gene end: 12286067
  
Corresponding Affymetrix probe sets: Dr.16436.1.A1_at (Zebrafish Array)   NM_201169_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000016859
NCBI entrez gene - 394144     See in Manteia.
RefSeq - NM_201169
RefSeq Peptide - NP_957463
swissprot - Q1L8F5
ZFIN ID - ZDB-GENE-040426-1164
Ensembl - ENSDARG00000007639
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CNOT4ENSGALG00000011682Gallus gallus
 CNOT4ENSG00000080802Homo sapiens
 Cnot4ENSMUSG00000038784Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cnot4a / CCR4-NOT transcription complex, subunit 4a / CNOT4* / O95628* / Q8BT14* / CCR4-NOT transcription complex subunit 4*ENSDARG0000000704574


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR034261  CNOT4, RNA recognition motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0016567 protein ubiquitination IEA
 cellular_componentGO:0030014 CCR4-NOT complex IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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