ENSGALG00000011682


Gallus gallus

Features
Gene ID: ENSGALG00000011682
  
Biological name :CNOT4
  
Synonyms : CCR4-NOT transcription complex subunit 4 / CNOT4
  
Possible biological names infered from orthology : O95628 / Q8BT14
  
Species: Gallus gallus
  
Chr. number: 1
Strand: 1
Band:
Gene start: 47800013
Gene end: 47869940
  
Corresponding Affymetrix probe sets: Gga.16464.1.S1_at (Chicken Array)   Gga.6842.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000037377
NCBI entrez gene - 417936     See in Manteia.
RefSeq - XM_015284818
RefSeq - NM_001012811
RefSeq - XM_015284807
RefSeq - XM_015284812
RefSeq - XM_015284783
RefSeq - XM_015284791
RefSeq - XM_015284797
RefSeq - XM_015284805
RefSeq Peptide - NP_001012829
swissprot - Q5ZJC9
Ensembl - ENSGALG00000011682
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cnot4aENSDARG00000007045Danio rerio
 cnot4bENSDARG00000007639Danio rerio
 CNOT4ENSG00000080802Homo sapiens
 Cnot4ENSMUSG00000038784Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR001841  Zinc finger, RING-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay IBA
 biological_processGO:0051865 protein autoubiquitination IEA
 cellular_componentGO:0030014 CCR4-NOT complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Deadenylation of mRNA
TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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