ENSDARG00000007734


Danio rerio

Features
Gene ID: ENSDARG00000007734
  
Biological name :stn1
  
Synonyms : B8JKF4 / stn1 / STN1, CST complex subunit
  
Possible biological names infered from orthology : CST complex subunit STN1 / Q8K2X3 / Q9H668
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 47499888
Gene end: 47513484
  
Corresponding Affymetrix probe sets: Dr.15822.1.S1_at (Zebrafish Array)   NM_200389_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000013967
NCBI entrez gene - 393360     See in Manteia.
RefSeq - NM_200389
RefSeq Peptide - NP_956683
swissprot - B8JKF4
ZFIN ID - ZDB-GENE-040426-1390
Ensembl - ENSDARG00000007734
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STN1ENSGALG00000008304Gallus gallus
 STN1ENSG00000107960Homo sapiens
 Stn1ENSMUSG00000042694Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004365  OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
 IPR011991  ArsR-like helix-turn-helix domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014647  CST complex subunit Stn1
 IPR015253  Stn1, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance ISS
 biological_processGO:0001944 vasculature development IMP
 biological_processGO:0010833 telomere maintenance via telomere lengthening ISS
 biological_processGO:0016233 telomere capping IEA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:1990879 CST complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043047 single-stranded telomeric DNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0005249 vasculature vasculature morphology , ameliorated
vasculature increased size , abnormal
vasculature broken , abnormal
Show

 ZFA:0005314 blood vessel blood vessel increased amount , abnormal
blood vessel dilated , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

 ZFA:0009323 thrombocyte thrombocyte increased amount , abnormal
Show

 ZFA:0009324 myeloid cell myeloid cell increased amount , abnormal
Show

 ZFA:0009350 pro-T cell pro-T cell decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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