ENSMUSG00000042694


Mus musculus

Features
Gene ID: ENSMUSG00000042694
  
Biological name :Stn1
  
Synonyms : CST complex subunit STN1 / Q8K2X3 / Stn1
  
Possible biological names infered from orthology : Q9H668 / STN1, CST complex subunit
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: C3
Gene start: 47501033
Gene end: 47537507
  
Corresponding Affymetrix probe sets: 10468329 (MoGene1.0st)   1434737_at (Mouse Genome 430 2.0 Array)   1445544_x_at (Mouse Genome 430 2.0 Array)   1456679_at (Mouse Genome 430 2.0 Array)   1458998_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000040944
Ensembl peptide - ENSMUSP00000138553
Ensembl peptide - ENSMUSP00000138727
NCBI entrez gene - 108689     See in Manteia.
MGI - MGI:1915581
RefSeq - XM_006526598
RefSeq - NM_175360
RefSeq Peptide - NP_780569
swissprot - Q3UXU8
swissprot - Q8K2X3
swissprot - S4R297
Ensembl - ENSMUSG00000042694
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 stn1ENSDARG00000007734Danio rerio
 STN1ENSGALG00000008304Gallus gallus
 STN1ENSG00000107960Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004365  OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014647  CST complex subunit Stn1
 IPR015253  Stn1, C-terminal
 IPR018856  CST complex subunit Stn1, N-terminal
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IEA
 biological_processGO:0010833 telomere maintenance via telomere lengthening IEA
 biological_processGO:0016233 telomere capping IEA
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IEA
 biological_processGO:0045740 positive regulation of DNA replication IDA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IEA
 cellular_componentGO:0001650 fibrillar center IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IEA
 cellular_componentGO:1990879 CST complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042162 telomeric DNA binding IEA
 molecular_functionGO:0043047 single-stranded telomeric DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr