ENSG00000107960


Homo sapiens

Features
Gene ID: ENSG00000107960
  
Biological name :STN1
  
Synonyms : Q9H668 / STN1 / STN1, CST complex subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: -1
Band: q24.33
Gene start: 103882542
Gene end: 103918205
  
Corresponding Affymetrix probe sets: 219100_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000224950
Ensembl peptide - ENSP00000358779
NCBI entrez gene - 79991     See in Manteia.
OMIM - 613128
RefSeq - XM_017016670
RefSeq - NM_024928
RefSeq - XM_011540184
RefSeq - XM_017016669
RefSeq - XM_006717976
RefSeq Peptide - NP_079204
swissprot - Q9H668
Ensembl - ENSG00000107960
  
Related genetic diseases (OMIM): 617341 - Cerebroretinal microangiopathy with calcifications and cysts 2, 617341
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 stn1ENSDARG00000007734Danio rerio
 STN1ENSGALG00000008304Gallus gallus
 Stn1ENSMUSG00000042694Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004365  OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014647  CST complex subunit Stn1
 IPR015253  Stn1, C-terminal
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000723 telomere maintenance IMP
 biological_processGO:0010833 telomere maintenance via telomere lengthening IMP
 biological_processGO:0016233 telomere capping TAS
 biological_processGO:0032211 negative regulation of telomere maintenance via telomerase IDA
 biological_processGO:0045740 positive regulation of DNA replication ISS
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0000784 nuclear chromosome, telomeric region IDA
 cellular_componentGO:0001650 fibrillar center IDA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IDA
 cellular_componentGO:0045111 intermediate filament cytoskeleton IDA
 cellular_componentGO:1990879 CST complex IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042162 telomeric DNA binding IDA
 molecular_functionGO:0043047 single-stranded telomeric DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001409 Portal hypertension 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001876 Pancytopenia 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002040 Esophageal varices 
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 HP:0002110 Bronchiectasis 
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 HP:0002206 Pulmonary fibrosis 
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 HP:0002216 Premature graying of hair 
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 HP:0002239 Gastrointestinal hemorrhage 
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 HP:0002875 Exertional dyspnea 
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 HP:0007763 Retinal telangiectasia 
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 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
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 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
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 HP:0025175 Honeycomb lung "Extensive interstitial fibrosis with alveolar disruption and bronchiolectasis." []
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 HP:0025179 Ground-glass opacification "A descriptive term that is applied to computer tomography imaging and that refers to a hazy area of increased attenuation in the lung with preserved bronchial and vascular markings." []
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 HP:0025390 Reticular pattern on pulmonary HRCT "On pulmonary high-resolution computed tomography, reticular pattern is characterised by innumerable interlacing shadows suggesting a mesh." [PMID:23247773]
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 HP:0030830 Rales "Abnormal breath sounds characterized by discontinuous clicking or rattling." [UToronto:chum]
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 HP:0100759 Clubbing of fingers "Terminal broadening of the fingers (distal phalanges of the fingers)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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