ENSDARG00000007901


Danio rerio

Features
Gene ID: ENSDARG00000007901
  
Biological name :crnkl1
  
Synonyms : crnkl1 / crooked neck pre-mRNA splicing factor 1
  
Possible biological names infered from orthology : Crooked neck-like protein 1 / P63154 / Q9BZJ0
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 49081967
Gene end: 49103317
  
Corresponding Affymetrix probe sets: Dr.5793.1.S1_at (Zebrafish Array)   NM_200946_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000100660
NCBI entrez gene - 393920     See in Manteia.
RefSeq - NM_200946
RefSeq Peptide - NP_957240
swissprot - E7FGM7
swissprot - Q803R7
ZFIN ID - ZDB-GENE-040426-694
Ensembl - ENSDARG00000007901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CRNKL1ENSGALG00000008429Gallus gallus
 CRNKL1ENSG00000101343Homo sapiens
 Crnkl1ENSMUSG00000001767Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IBA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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