ENSGALG00000008429


Gallus gallus

Features
Gene ID: ENSGALG00000008429
  
Biological name :CRNKL1
  
Synonyms : CRNKL1 / crooked neck pre-mRNA splicing factor 1
  
Possible biological names infered from orthology : Crooked neck-like protein 1 / P63154 / Q9BZJ0
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 3921514
Gene end: 3933565
  
Corresponding Affymetrix probe sets: Gga.13278.1.S1_at (Chicken Array)   Gga.17078.1.S1_at (Chicken Array)   GgaAffx.22581.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000013717
Ensembl peptide - ENSGALP00000045127
NCBI entrez gene - 421243     See in Manteia.
RefSeq - XM_419315
swissprot - A0A1D5NXM8
swissprot - F1P3Q8
Ensembl - ENSGALG00000008429
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 crnkl1ENSDARG00000007901Danio rerio
 CRNKL1ENSG00000101343Homo sapiens
 Crnkl1ENSMUSG00000001767Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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