ENSMUSG00000001767


Mus musculus

Features
Gene ID: ENSMUSG00000001767
  
Biological name :Crnkl1
  
Synonyms : Crnkl1 / Crooked neck-like protein 1 / P63154
  
Possible biological names infered from orthology : crooked neck pre-mRNA splicing factor 1 / Q9BZJ0
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: G1
Gene start: 145917479
Gene end: 145935014
  
Corresponding Affymetrix probe sets: 10488303 (MoGene1.0st)   1420849_at (Mouse Genome 430 2.0 Array)   1420850_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000001818
NCBI entrez gene - 66877     See in Manteia.
MGI - MGI:1914127
RefSeq - NM_025820
RefSeq Peptide - NP_080096
swissprot - P63154
Ensembl - ENSMUSG00000001767
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 crnkl1ENSDARG00000007901Danio rerio
 CRNKL1ENSGALG00000008429Gallus gallus
 CRNKL1ENSG00000101343Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR003107  HAT (Half-A-TPR) repeat
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR013026  Tetratricopeptide repeat-containing domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0000974 Prp19 complex IBA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex ISO
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0071007 U2-type catalytic step 2 spliceosome IEA
 cellular_componentGO:0071010 prespliceosome IBA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 cellular_componentGO:0071012 catalytic step 1 spliceosome IBA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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